Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5476 111 2e-19 >seq5476 Length=1777 Score = 111 bits (122), Expect = 2e-19 Identities = 296/444 (67%), Gaps = 34/444 (8%) Strand=Plus/Minus Query 9132 GCGTGAACACCCAAGATCTTCTCGCGTCCCCGAACACTTGGGAG-AGCTACTTGGATCTT 9190 |||||||| | || || || ||||| |||||| | |||| | | || || || Sbjct 550 GCGTGAACCCGTAAAATAGCTTCACGTCCGCGAACA-TCCGGAGTACCAACCAAGACTTT 492 Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 || ||||| ||||| |||||||| | || ||| | | ||| || || || || Sbjct 491 CCGGTCAAAACGACCAGGACGAAGCAAAGCTGGATCCAATACATCGGACCGGTTAGTTGC 432 Query 9251 GGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA-----A 9302 ||| || |||| || |||| ||||| || ||||||||||| | |||| | Sbjct 431 GGCAATAACAATAACACCT---TCATTGCCCTCGAAACCATCCAT---TTTCAACTAACA 378 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--------CGCTGGCA-TACCACCAGCA 9353 | |||||| | || ||||| |||||||| || |||||||| | | |||| | Sbjct 377 ACTTGGTTTAAGGTCTGTTCACGTTCATCGTTACCACCACCGCTGGCATTGCTACCACGA 318 Query 9354 CTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCG 9413 | || || | |||||||| ||||| || |||| ||||| |||| ||||| Sbjct 317 CGACG------ACCGATTGCATCAATTTCATCGATAAAGATAATACTTGGTGCATTTTTC 264 Query 9414 CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACA 9473 || ||| || | ||| || || | |||| || ||||| |||||||| || ||| Sbjct 263 TTAGC-ATTGGTAATAAATCACGTACACGACTGGCACCAACACCGACAAACATTTCTACA 205 Query 9474 AAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGC 9532 |||| || | ||| |||| || || || ||||| | |||||| |||| || || || Sbjct 204 AAGTCTGAACCAGAA-ATTGAGAAAAATGGTACATTGGCTTCACCAGCAACTGCCCGCGC 146 Query 9533 GAGAAGAGTCTTACCCGTACCTGG 9556 || | |||||||| ||||| || Sbjct 145 AAGTAAGGTCTTACCAGTACCCGG 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589922200157040