Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1453 100 3e-16 >seq1453 Length=2861619 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 158569 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGT 158628 ||||| | ||||| || || || |||| || ||||| |||||||||||||| ||||| Sbjct 1252258 GCATATCGCTTAGCTCTTCAAACACGAGAACAACATATTAGAAGAGACAAAGCTACCAGC 1252317 Query 158629 AACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCAT 158688 || || || || ||||||||| | ||||| |||||||||| | ||||| | ||| ||| Sbjct 1252318 AATATTTGTACTGCACAAGCATTACTGGCAAATATGTCTGCAATGTATGCTGTATACCAT 1252377 Query 158689 GGTGCAGATGGACTACATGCTATAGCAA 158716 || | || ||| || | ||| |||| Sbjct 1252378 GGACCTGAAGGAATAAAAAATATTGCAA 1252405 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 159541 TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAG 159600 || ||| | ||||| ||||||||||| ||| |||| || |||||| | || | Sbjct 1253419 TCTTGTTTAATGATAACATATCCATCAACAAATGGAGTGTTTGAAGAGACTATTGCCGAT 1253478 Query 159601 ATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAAT 159660 || |||| || ||||| | ||||||||| || ||| | ||||| || || | ||| Sbjct 1253479 ATTTGTACTATGATTCATAAAGCTGGTGGTCAAGTGTATTTAGATGGAGCCAACATGAAT 1253538 Query 159661 GCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTA 159720 || || || || | ||| |||| || ||| ||||| | ||||| ||||| Sbjct 1253539 GCTCAAGTTGGATTGTGTCGTCCAGGTGATTACGGTAGCGATGTTTCACATCTTAACTTG 1253598 Query 159721 CATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || || || || || || || |||||||| ||||| | || |||||||| || Sbjct 1253599 CATAAAACGTTTTGCATACCTCACGGCGGTGGAGGACCTGGAATGGGACCTATTGGAGT 1253657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587992791814560