Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1955 176 1e-38 seq2112 167 5e-36 seq7885 159 8e-34 seq3153 154 3e-32 seq878 122 2e-22 seq182 113 1e-19 >seq1955 Length=5322578 Score = 176 bits (194), Expect = 1e-38 Identities = 171/219 (78%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || || |||||||| |||||||| |||||||| ||||| | |||||||| Sbjct 1860811 AGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGAGTTCTT 1860870 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || || || | ||||||||||| || ||||| ||||| Sbjct 1860871 CCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGGAATTCCTTC- 1860929 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || ||| || ||||| || || |||||| ||| |||||||| ||| Sbjct 1860930 TTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTA 1860989 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||||| || | |||||| || || | |||||| Sbjct 1860990 ATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1861028 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || || |||||||| ||||||||||||||||||||||| | ||||||||| Sbjct 1861038 AGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTTCTT 1861097 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || || || || | ||||| || || || ||||| |||||| Sbjct 1861098 CCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCTTCT 1861157 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || || || || || || ||||| ||| ||| |||||||| || Sbjct 1861158 TTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTG 1861217 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || ||||| || | |||||| || || | ||||||| Sbjct 1861218 ATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | || || || || |||||||| ||||||||||| ||| ||||| Sbjct 1860583 AGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAAAGTGTTCTT 1860642 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || || || || | |||||| || || |||||||| |||||| Sbjct 1860643 CCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCT 1860702 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || || || ||||| || || |||||| ||| |||||||| ||| Sbjct 1860703 TTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTA 1860762 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||||| || | |||||| || || | |||||| Sbjct 1860763 ATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1860801 Score = 161 bits (178), Expect = 2e-34 Identities = 167/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | || || || || |||||||| ||||| ||||| | |||||||| Sbjct 1861266 AGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTG--AGAGTTCTT 1861323 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| ||||| || ||||| | |||||| || ||||||||||| |||||| Sbjct 1861324 CCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATTCCTTCT 1861383 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || || || || || || ||||||||| ||| ||||| | ||| Sbjct 1861384 TTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAACTTCTAAAGTA 1861443 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| || || | |||||| Sbjct 1861444 ATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 156 bits (172), Expect = 9e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | || || || || || ||||| ||||| ||||| | |||||||| Sbjct 1861492 AGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGTTCTT 1861551 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || ||||| || ||||| | ||||| ||||| || ||||| |||||| Sbjct 1861552 CCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGAATTCCTTCT 1861611 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || ||| || || || || ||||| ||| ||| |||||||| || Sbjct 1861612 TTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGTG 1861671 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || ||||| || | |||||| || || | ||||||| Sbjct 1861672 ATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 1861710 >seq2112 Length=2858 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||| || |||||||||||||| ||||||| ||| || | |||||||| Sbjct 373 ACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCTTCT 314 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || || || || ||||| | || |||||||| || ||||| ||||| ||||||||| Sbjct 313 AATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGA 254 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || || || ||||| || || ||| ||| |||||||| |||| || || Sbjct 253 ATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTTA 194 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | ||| || ||||| | ||||||| Sbjct 193 CCCGTGAGAGTCTTGACGAAAATTTGCATT 164 Score = 138 bits (152), Expect = 3e-27 Identities = 123/154 (80%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||||||| ||||| || || |||||||||||||| ||||||| |||||| | Sbjct 154 AGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGGAAAGAGTACGG 95 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || || || || || || | || |||||| || |||||||| |||||| Sbjct 94 CCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAGGAATACCTTCT 35 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGG 195076 |||||||||||||| || || || ||||||| Sbjct 34 TTGTCTTGAATTTTGGCTTTTACATTTTCAATGG 1 >seq7885 Length=810 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| || || || || || |||||||||||||| ||||||| |||||| | Sbjct 530 AGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGA 589 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || || || || ||||| | || |||||||| |||||||| |||||| Sbjct 590 CCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCT 649 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| || || || |||||||| || ||| ||| ||||| || ||| Sbjct 650 TTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCCAGAGTA 709 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| || || | |||||| Sbjct 710 ATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || |||||||||||||| ||||| | ||| || | |||||||||||||| Sbjct 90 TGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCGAGCTGT 149 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | || || || ||||| ||||| ||||| || ||||||||||| Sbjct 150 TTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTTA 209 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| || || ||| ||| ||||| | |||| || ||||| || Sbjct 210 GTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTA 269 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||||||| || | |||||| Sbjct 270 AGAGTTTTTACAAATATTTGCAT 292 Score = 140 bits (154), Expect = 7e-28 Identities = 157/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| |||||||| || ||||| || || || ||||| | ||| || | |||||||| Sbjct 312 ACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGTGTACGACCATCTTCT 371 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || || ||||| ||||| |||| ||||| || |||||||| ||||| || |||||| Sbjct 372 AATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGAATACCTTCCTTATCTTGA 431 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || ||||| || || ||| ||| || || || || | || ||| Sbjct 432 ATTTTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACCTCCAGAGTGATGGT-TTT 490 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| ||||| | |||||| Sbjct 491 CCCGTAAGAGTTTTAACGAAAATTTGCAT 519 >seq3153 Length=1268 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| || || | || || || || |||||||| ||||||||||| | || ||||| Sbjct 1186 AGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGTTCTT 1127 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || ||||| || ||||| | ||||||||| ||||| ||||| |||||| Sbjct 1126 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCCTTCT 1067 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| ||||| ||| || ||||| || || || ||| ||| |||||||| || Sbjct 1066 TTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTG 1007 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || | ||||| || || | ||||| Sbjct 1006 ATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 >seq878 Length=1131996 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||||||||||||||| ||||| | | || | |||||||| || || || || Sbjct 558615 GTTGACTCTTTTTGAATATTATAATCAGACAATGTGCGTCCATCTTCTAGTTGTTTTCCA 558556 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || ||| || ||||| ||||| ||||| || |||||||||||| || Sbjct 558555 GCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTTGCTTTT 558496 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || |||||||| || || || || || || || | || || |||||||| ||| Sbjct 558495 ACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTT 558436 Query 195124 TTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 558435 TTGACAAAGATCTGCAT 558419 >seq182 Length=1849075 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||||||||| || || | | ||| | |||||||| | ||||| || || || | Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 |||| |||||||| || || || || |||||||| || |||||||| || || || | Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 122960 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || || || || ||| |||||||| || | || || || ||||||||||| || | Sbjct 122961 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 123020 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 123021 ATATCTGCAT 123030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109368645758582