Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq878 93.3 3e-14 seq1955 91.5 1e-13 seq2112 86.0 4e-12 seq4594 84.2 1e-11 >seq878 Length=1131996 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || ||||| | || || || || | ||| ||||| ||||| ||||| || | Sbjct 558647 TTCCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAG 558588 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | ||| |||| || || |||||||| ||||| || | || |||||| ||| | | Sbjct 558587 ACAATGTGCGTCCATCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTG 558528 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || ||| || ||| || | | || | || |||||||| Sbjct 558527 GAATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAA 558468 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||||| ||||| || || | || || |||||||||||||| Sbjct 558467 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 558419 >seq1955 Length=5322578 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||||| | ||||| ||||| || | ||| |||||| || || || || || | Sbjct 1860573 TCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 1860632 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| ||| | |||| || || ||||| || ||||| || | ||||||||| || | || Sbjct 1860633 AAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 1860692 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || || || |||||| ||| || |||| | || || ||||| Sbjct 1860693 AATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAAC 1860752 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || ||||| || ||||| || |||||||||||||| Sbjct 1860753 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||| ||||| || || || ||| |||| || || ||||| || ||||| Sbjct 1861747 TCTTTCTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAA 1861806 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| || ||| | || | || || || || |||||| || || Sbjct 1861807 ATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTC 1861866 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || || ||||| || | ||| ||||||||||| || | |||||| ||| Sbjct 1861867 TCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACA 1861926 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 1861927 AAGATCTGCATTTT 1861940 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||| ||||| || || || ||| |||| || || ||||| || ||||| Sbjct 1864387 TCTTTCTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAA 1864446 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| || ||| | || | || || || || |||||| || || Sbjct 1864447 ATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTC 1864506 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || || ||||| || | ||| ||||||||||| || | |||||| ||| Sbjct 1864507 TCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACA 1864566 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 1864567 AAGATCTGCATTTT 1864580 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | ||| |||| |||| || ||||||||||| ||||| || | Sbjct 1860800 TTCCTCCTCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 1860859 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| | |||| || |||||||| || ||||| || | ||||| ||||| ||| Sbjct 1860860 AGAGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCG 1860919 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||| ||| || |||||| || || |||| | || || |||| Sbjct 1860920 G-AATTCCTTCTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAA 1860978 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || ||||| || ||||| || |||||||||||||| Sbjct 1860979 CTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1861027 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || || || | ||| ||| || || || ||||| || || || ||| | || Sbjct 1861495 CTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGTTCTTCCA 1861554 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || | ||||| || ||||| || | ||||||||||| | || | || || ||| Sbjct 1861555 TCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGAATTCCTTCTTTG 1861614 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || |||||| || || | |||| | || || ||||| || | || || Sbjct 1861615 TCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGTGATA 1861674 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || ||||| || |||||||| ||||| Sbjct 1861675 GTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 >seq2112 Length=2858 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| ||||| ||||| || ||||| | ||| |||| || | |||||||| ||||| Sbjct 356 TTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCTTCTAATTGTTTTCCAGCAAA 297 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || || ||||| | || | || |||||||| ||| || ||| || Sbjct 296 GATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATTTTTGCTTTTACATT 237 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || || ||||| || | || || ||||| |||||||||||||| || Sbjct 236 TTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGAC 177 Query 34970 AAAGATCTGCAT 34981 || || ||||| Sbjct 176 GAAAATTTGCAT 165 >seq4594 Length=760 Score = 84.2 bits (92), Expect = 1e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| || ||||||| ||| |||||||||||||||||| || | Sbjct 651 TTCCTCCTCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTG 710 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTG 34861 |||| ||| | |||| || || ||||| || ||||| |||| ||||| Sbjct 711 AAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTG 759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324602161873488