Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1429 181 1e-40 seq2024 163 3e-35 >seq1429 Length=9113309 Score = 181 bits (200), Expect = 1e-40 Identities = 224/309 (72%), Gaps = 1/309 (0%) Strand=Plus/Minus Query 47231 TTGAATAGATCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcg 47290 ||| ||||| || ||| ||||||||| ||||| | || | |||||| | || Sbjct 7667342 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCT 7667283 Query 47291 ttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCT 47350 ||||||||| | ||| | ||||||||| |||| |||||| ||||| || || ||||| Sbjct 7667282 TTCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCT 7667223 Query 47351 ACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGC 47410 | | || ||||| || || |||||||||||||||||||||||||| |||||||| || Sbjct 7667222 TCTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 7667163 Query 47411 AGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTAT 47470 ||||||||||| ||||| | ||||| ||| || |||||| |||||||| ||| | | Sbjct 7667162 TGTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATTTCTAACTCCATA-TTTAGCAA 7667104 Query 47471 CTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATA 47530 | |||||||||| | || | ||||| ||||||||| | ||| || Sbjct 7667103 TTTTTTTTTTAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCGTA 7667044 Query 47531 TTGAAGAAT 47539 ||| | ||| Sbjct 7667043 TTGTAAAAT 7667035 Score = 172 bits (190), Expect = 6e-38 Identities = 227/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| |||| ||||||| || ||||| || | ||||| |||||||||||||||||| Sbjct 7665259 TTACCAGTATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 7665200 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 ||||| || | | | || |||| |||||| ||||||||||| | ||||| || ||||| Sbjct 7665199 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 7665140 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || || ||||| | |||||| | | |||||| |||| |||| || || | || Sbjct 7665139 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 7665080 Query 48450 CTTCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 | || || |||| ||| | || | || | || |||||||| || |||| || Sbjct 7665079 GTACCTCTTGCTCGAATACAATGTACATTAAGT-CCAATACCACCAGCTGATTTACTAAT 7665021 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || || || | ||| | ||||| ||||||||||| |||||||| || |||| |||| Sbjct 7665020 GAGTGCGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGTTAA 7664961 Query 48569 TAGAAAACAACT 48580 || ||||||||| Sbjct 7664960 TAAAAAACAACT 7664949 Score = 131 bits (144), Expect = 2e-25 Identities = 198/281 (70%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 |||||||||||| | || | ||| | || | ||| | ||||||||||||||| |||| Sbjct 7664882 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 7664823 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 | |||||||| || ||||| ||||| ||| | ||| ||||| ||| ||| Sbjct 7664822 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATA 7664763 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 | | | || | ||||||||||| || ||||||||||| | ||| || |||||| Sbjct 7664762 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 7664703 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCA 48818 || | ||| | |||| | ||||| ||||||||||| || || ||| || ||||| Sbjct 7664702 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 7664643 Query 48819 TTAATAATTGATGAATTTA--TTCTTTCCTTATGTTTATAT 48857 | ||| |||| ||||||| || ||| | | | ||| ||| Sbjct 7664642 TAAATTATTGCAGAATTTAACTTATTTGCATTTTTTTGTAT 7664602 Score = 120 bits (132), Expect = 3e-22 Identities = 117/148 (79%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| ||||| |||||||||||||||||||||| || | |||| |||||||||| Sbjct 7664437 CACTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAATA 7664378 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 | |||||||||||||| | || || ||| || | | |||| ||||| | ||||| Sbjct 7664377 TTGCATAATCTGGATGTTTGGTAGT-CATAGTTGCTGCTGTTTCAGCTGCAAGATTATCT 7664319 Query 49035 AATTCTTTAGTAGTTACACCTGTATATA 49062 ||||| |||||||||||||| ||||| Sbjct 7664318 AATTCAACAGTAGTTACACCTGAATATA 7664291 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||||||||| |||||||| ||| | ||| | |||| || ||||||| || Sbjct 7667612 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 7667553 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||||| ||||| ||||||||||| | ||| |||||||| | |||||| | Sbjct 7667552 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 7667493 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAA 47199 |||||||||| ||||| ||||||||||||| Sbjct 7667492 TTTGTGGTATTTCCCAAACTGTTTTATAAA 7667463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||||| || || || |||| |||||| ||||| || |||| |||| | | | Sbjct 7666530 ACAAACATATTAACAGCAATTGAAGCTAAATTACACACAGCAACTTCATCTGGACTGGAA 7666471 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983 || || | | ||| | ||||| ||||| || || || || || | |||||||||||| Sbjct 7666470 TACTGCACAACTTCTGTACATAAATTACTACTCTTTATTGTTCCTATATTTTGATGATTT 7666411 Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 ||| || || || || ||||||||| | || ||||| ||||| | |||| Sbjct 7666410 GATTTGCG--ATTGCAATGATCTTTATAAAGCATATATGGAGTTCCTGTTTCAACTTGAG 7666353 Query 48043 ATTCAATGATAGATTTCCA 48061 | || |||| | |||| Sbjct 7666352 AAATAAGAATAGCTGTCCA 7666334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/189 (69%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 |||||| |||| ||| ||| | ||| |||| ||| | ||| | | || ||| ||||| Sbjct 7666946 TCCTTTGCTTACTGGACTACCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTC 7666887 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 ||| || ||||| || |||| |||||| | |||||||||||| | || || || || Sbjct 7666886 ACAGCTGGCTTCTAAAGCACCATAATACAATGTTTCAAATATCTGAATATTAAGTTTTTG 7666827 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 ||| ||| |||||| ||||| |||| |||||| | ||||||| Sbjct 7666826 TGCCTCTTCACTTTCAAATGGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAAT 7666767 Query 47720 ACCAATACC 47728 |||||||| Sbjct 7666766 TCCAATACC 7666758 >seq2024 Length=8919894 Score = 163 bits (180), Expect = 3e-35 Identities = 168/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||| || || | ||| || || ||| |||||||||||||||| |||||| || Sbjct 2396601 TGCATCTGCAATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCAT 2396660 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCT 19340 || | ||||| || || ||||| | ||| |||||||| |||||||| || ||||| Sbjct 2396661 GGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCG 2396720 Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400 ||| || | ||| ||||| || ||||||||| ||||||||||||||||| ||||| Sbjct 2396721 TTCAACAAGATTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGA 2396780 Query 19401 AATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 ||||||||||||||| | ||||| ||||||||||| Sbjct 2396781 TATAAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 138 bits (152), Expect = 1e-27 Identities = 165/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 18766 TTTTTGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATC 18825 ||||| | |||||||||| |||| |||||| || ||||||| |||||| ||| Sbjct 2395963 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 2396022 Query 18826 ATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCT 18885 | | ||| ||||| ||||| | || |||||||| ||||||||| | |||||||||||| Sbjct 2396023 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 2396082 Query 18886 ATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG---GTATAGA 18942 || || || || || ||||| ||| ||||| |||| || || | || | Sbjct 2396083 ATTTTAACAGCATCCTTAATAATTGATGTAACTC---GTTCACAAGATGGTTTTTGTACA 2396139 Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 | ||||| ||||| |||||||||||||||||||||| ||||| Sbjct 2396140 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||| || | ||||| |||||| | || ||||| || |||||||||| Sbjct 2396287 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTT 2396346 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||||| |||| ||||| ||| |||||| |||||||||||||| ||||||| Sbjct 2396347 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2396406 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | | ||| | || | ||| | || || ||||| || | ||||||| || Sbjct 2396407 CAACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2396466 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | || ||| |||||||||| | || |||| |||||||| Sbjct 2396467 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATA 2396508 Score = 122 bits (134), Expect = 1e-22 Identities = 125/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 ||||||| | |||||||||||| |||||||||||||| || || |||||||| ||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTatttttattttcttt-aaga 19566 ||| |||||| | |||| |||||||| | |||||||||| | ||||||||| || | Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAATA 2397017 Query 19567 ataggttccattttttgaaaaataataatttcttttcAATA 19607 || || || | || | || || || ||||||| |||| Sbjct 2397018 AT-GGCTCTAATTCTGGATTAAATTTATTTTCTTTCAAATA 2397057 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTT-TTCAAAGAAATTAGTTTTTCCCT 18715 |||||||||| |||||||||||| | ||| |||| ||||||||| || || || || | Sbjct 2395750 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTT 2395809 Query 18716 CTAATGATATACATTCCATAAAATCAAATGGATTTT 18751 |||| || ||| |||||| |||||||| ||||||| Sbjct 2395810 CTAAAGAAATATGTTCCATGAAATCAAACGGATTTT 2395845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562052968543440