Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2024 105 8e-18 >seq2024 Length=8919894 Score = 105 bits (116), Expect = 8e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||| || | ||||| ||| || | ||||||||| | |||||||||||| Sbjct 2396289 TCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTTTT 2396348 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || || || |||||| ||| ||||||||||||||| ||||| ||||| || Sbjct 2396349 AACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAGCA 2396408 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 || | |||| | ||||| | ||| | || | ||||| ||| | ||||| || Sbjct 2396409 ACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAGCT 2396468 Query 37380 TTTAATTTAACACAT-TCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 ||| | ||||||| ||| | |||| || || || || | ||||| Sbjct 2396469 TTTTTTGCAACACATGGCAAAT-TTTCGATAGCATTAAATAAAAAGT 2396514 Score = 104 bits (114), Expect = 3e-17 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 37008 CTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTT 37067 ||||| ||||||||||| || |||| |||||| |||| | |||| || || || | || Sbjct 2395990 CTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGCCTATCATTTCA 2396049 Query 37068 ACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTA 37127 || || | ||||||| | |||| || ||| ||| | |||||||| |||| || ||| Sbjct 2396050 ACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTTAACAGCATCCTTAA-TA-ATTG 2396107 Query 37128 ACAATAACTTCTTCAGTTGGGGGATATTTTAAA---TATTTAAACAATAAACATGCAAAA 37184 | ||||| |||| | || | || || | | ||| |||| ||||||||||||| Sbjct 2396108 A-TGTAACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGCAAAA 2396166 Query 37185 TCACAATGTAAACC 37198 ||||||||||| || Sbjct 2396167 TCACAATGTAATCC 2396180 Score = 104 bits (114), Expect = 3e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 ||||| || || |||||||||| ||| ||||||||| || |||| |||||| || || Sbjct 2396604 ATCTGCAATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 2396663 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 | ||||||||||| ||||| | || || | || ||| || || | | ||| | | Sbjct 2396664 AACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 2396723 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | | | || ||||| || || |||||| |||||||| || || | |||| ||| Sbjct 2396724 AACAAGATTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATAT 2396783 Query 37619 AAAATGTCTTTCATCATTTGATAATTTTTTCCAATCA 37655 ||||||| ||||| | ||| || ||||||||| Sbjct 2396784 AAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/161 (74%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 36806 ATATTATTTTTCCTTCATTTTTTAAAAATCTTCATCTAAC-GTAAATTTTATTTCCTTAT 36864 ||||||||||| | | |||||| || ||| |||| ||||| || |||| | Sbjct 2395684 ATATTATTTTTGTCTTGTAAATTAAAATTCAGCAT-TAACAGTAAAATTACTTTCAATTC 2395742 Query 36865 TACTATTCATAACTCCCATTTTTTGATATTCTCCAAC-TCGTCTTTCGAAAAAATTTGTC 36923 || | ||| |||||| ||||||||||||||| || | | |||| || || |||||| Sbjct 2395743 TATCTTGCATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTC 2395802 Query 36924 TTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 || ||||||| || |||| |||||| |||||||| ||||| Sbjct 2395803 TTACCTTCTAAAGAAATATGTTCCATGAAATCAAACGGATT 2395843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592257968133840