Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_018285.1 Length=40758 Score E Sequences producing significant alignments: (Bits) Value seq1563 154 4e-33 seq2131 102 2e-17 >seq1563 Length=10698 Score = 154 bits (170), Expect = 4e-33 Identities = 501/774 (65%), Gaps = 8/774 (1%) Strand=Plus/Plus Query 30550 TGATTCTGCCGCTGGATTGACTATCCCACAAGATATCCGCACAGCTATCAATACTTTGGT 30609 |||||||| |||||| ||||||| ||| ||| | | || |||||| ||||| | || Sbjct 6102 TGATTCTGAAGCTGGACTGACTATTCCAGTTGATGTACAGACTGCTATCCATACTCTAGT 6161 Query 30610 TCGTCAATATGACTCATTGCAAGAGTATGTAAACGTTGAAAATGTCACTACTCTTACTGG 30669 | |||||| ||||| || | ||||| ||||||| ||| ||||| | ||| Sbjct 6162 AAGACAATATTCGTCATTAGAAACTTTAGTAAATGTTGAAAGTGTGTCTACTGCTCATGG 6221 Query 30670 TTCTCGTGTTTACGAAAAATGGGCTGAAATCACTGGCCTTTCTAAAATCGATGATGAAGC 30729 |||| | ||||| |||||| || || || || || ||| | ||||||||| Sbjct 6222 TTCTAGAGTTTATGAAAAACTAGCAGATATTACACCATTTGTTAACCTGGATGATGAAAA 6281 Query 30730 TGGACAAATCGGTGCTAATGATGACCCTAAATTGTCTCTTATCCGCTACACTATCAAACG 30789 | ||||| |||| || |||||| ||||| || |||| || | | ||| | || Sbjct 6282 AGCTCAAATTGGTGATATTGATGATCCTAAGTTAACTCTGATTAAGTTTGCGATCCATCG 6341 Query 30790 CTATGCTGGTATCTCTACAGTAACTAACAGCTTGCTTGCTGATTCTGCTGAAAATATCCT 30849 || ||||| || |||| || ||||| | | | |||||| | || |||||||| || Sbjct 6342 TTACGCTGGCATTACTACCGTTACTAATACACTTTTGGCTGATACGGCAGAAAATATTCT 6401 Query 30850 TGCATGGTTGTCTGGTTGGATTGCGAAAAAAGTTGTTGTCACTCGTAACAAAGCGATTTT 30909 || |||||| ||| || || | |||||| |||||||| |||| ||| | Sbjct 6402 TGGCTGGTTGCAACAATGGGCAGCACGCAAGGATGTTGTGACTCGTAATCAAGCTATTCT 6461 Query 30910 GGAAGTTATCGCAACACTCCCAACTAAACCAACATTGGCTAAATGGGACGATATTATTGA 30969 || ||||| | ||| ||| |||| || || | |||| | || ||||||| || Sbjct 6462 GGCTGTTATGGGCACAGCACCAGCTAAGCCTACTATTACTAACTTTGATGATATTAAGGA 6521 Query 30970 TCTCGAAGCTAAAG---TTGACCCAGCAATCAAACAAACATCATTCTTCTTGACTAACAC 31026 || || ||| |||| |||||||| | ||| ||| || | |||||| Sbjct 6522 CCTGCAAAATAATACGCTTGATCCAGCAATTATCGCAACTTCAAGCTATGTTACTAACCA 6581 Query 31027 TTCAGGCTTTACTGCTCTTAAGAAAGTTAAGAATGCAATGGGTGACTACCTCATGGAACG 31086 || || |||| || ||| ||| | || ||||| ||| || | || ||| Sbjct 6582 ATCTGGTTTTAATGTTCTATCTAAAATGAAAGATGCAGATGGTCGTTATTTAATTCAACC 6641 Query 31087 TGATGTTAAATCACCAACAGGCTACTCA-ATCGACGGTTTTGCAGTTAAAGAAGTTTCTG 31145 | |||| || | | | | | || | || | || ||||||| ||| | || Sbjct 6642 TAATGT-AACTAATCCTGAAGTTAAAGAGATTGGTGGACATGCAGTTCAAGTTATCGGTG 6700 Query 31146 ACCGCTGGCTCGCTAATGGTGCAGCTGGAGCTATGCCATTGTACTTTGGTGACTTGAAAC 31205 | ||| | | ||| | ||| || | || | ||||| |||||| | || | Sbjct 6701 ATAAGTGGTTACCAGATGTTTCAG---GATCACATCCGCTTTACTTCGGTGACCTAAAGC 6757 Query 31206 AAGCGGTAACATTGTTTGACCGCCAACACTTGTCACTACTTTCAACTAACATCGGTGGTG 31265 ||| | || || | |||||| ||| |||| | | |||| ||||| || |||| Sbjct 6758 AAGGTATTACTTTATATGACCGTCAAAGAATGTCTGTTACTCCAACAAACATTGGAGGTG 6817 Query 31266 GAGCGTTTGAAACTGATACGACTAAAGTACGTGTTATTGACCGCTTCGACGTTG 31319 |||| |||||||||||||| ||||| | || ||||||| || || ||||||| Sbjct 6818 GAGCATTTGAAACTGATACAACTAAGATCCGCTTTATTGATCGGTTTGACGTTG 6871 Score = 104 bits (114), Expect = 6e-18 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 27501 TCAATGTTTAGCGACAACACCGCAATTGGCTTTGTCTATCCTTATCTAGGGGCAGACGGT 27560 ||||||||| ||||| || || ||||| ||||| ||||| |||| | | ||| || Sbjct 3024 TCAATGTTTTCGGACAATACAGCGATTGGTTTTGTTTATCCATATCAAAATGAAGAAGGG 3083 Query 27561 -AGCCAAAAATGGCATATAGAACAGCATAGTTTCATTCCGTGGCAACAAGCAGGCTCACT 27619 ||||| | |||||||| | || || ||||| ||||||||||||||||| || || || Sbjct 3084 CAGCCACGA-TGGCATATTGCTCAACACAGTTTTATTCCGTGGCAACAAGCCGGATCGCT 3142 Query 27620 TGAAGCCAAAGAAAAACAAGACGG 27643 ||| || |||||||| ||||| || Sbjct 3143 TGAGGCTAAAGAAAAGCAAGATGG 3166 >seq2131 Length=5454 Score = 102 bits (112), Expect = 2e-17 Identities = 220/323 (68%), Gaps = 12/323 (4%) Strand=Plus/Plus Query 35073 CAGCAAACCATGAACGCCACTTGGCTAACACTTACTGGTAATGCTGAAGAAGGTAAGAAG 35132 || || || ||||| || || |||||||| |||||||| ||||||| | |||||| Sbjct 540 CAACAGACAATGAATGCGACATGGCTAACCCTTACTGGAAATGCTGGTAAGGGTAAGTCA 599 Query 35133 ATGGTCGACATGACCAACCAAATGGCACAAGCGGCGGCT---AACTCAACCGAAATGGTT 35189 ||||| | || | | |||||| || || ||| |||||||| | ||||||| Sbjct 600 ATGGTTAAGCAGATTGATGATATGGCA---GCTGCAGCTCAAAACTCAACTGCAATGGTT 656 Query 35190 GACGGTATGAACCAGAAATTCTATGCCGTTACCCACAACACCGAGTTGACCAAGCAACAA 35249 ||| | | | || ||||||||||| | | | | | | | |||| | || Sbjct 657 GACAATCTTAGTCAAAAATTCTATGCAATCAACAAAGATCCTAATCAGACCG-GTAATTT 715 Query 35250 ACACAAGCCATT-CTTACCTTGCAAGATGCGTTTGGTCAGACCGATG--CAGCCGTTGAG 35306 ||| | | || ||| | |||||||| ||||| | ||||||| ||| ||||| Sbjct 716 GGTCAAATCGGTGCTGACCCTTCAAGATGCCTTTGGGAAAACCGATGATCAG--GTTGAA 773 Query 35307 AATTTCGCTACTCAGTGGGCTCAAATGATTGCCAATGGTAAGGTTCAAGGGCAAGACATG 35366 || || | ||| |||| | ||||||||| |||||||| || || | ||||||||| Sbjct 774 AACTTTGGTACGCAGTTTGGTCAAATGATGGCCAATGGCAAAGTGTCTGCACAAGACATG 833 Query 35367 ATGTCTATTATCAATGTCTTCCC 35389 |||||| || |||| ||||| || Sbjct 834 ATGTCTTTTGTCAACGTCTTTCC 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130291704677440