Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq878 109 4e-19 seq7885 107 1e-18 seq1955 107 1e-18 seq182 98.7 8e-16 seq2112 93.3 3e-14 seq3153 89.7 4e-13 >seq878 Length=1131996 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| || ||||||| || ||||||||||||||| |||||||| | | || | Sbjct 558633 CGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGACAATGTGCGTCCA 558574 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | || || || ||||| |||| || || ||||| | |||| || ||||| Sbjct 558573 TCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTA 558514 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||| ||| ||||||| | | | ||||| ||||| ||||||| || || Sbjct 558513 TCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATT 558454 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| ||||| ||||| |||||||| Sbjct 558453 GTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 558419 >seq7885 Length=810 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| || |||||||| || |||||||||||||| ||||| || || | ||| | Sbjct 78 CGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCA 137 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | ||| ||||| ||||| |||| || ||| ||||| | |||| || ||||| Sbjct 138 TCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTA 197 Query 48672 TCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 || ||| ||| ||||| ||| | | | || || || || || || | ||||| Sbjct 198 TCTTGAAT-TTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAAT 256 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || | |||||||||||| || ||||| Sbjct 257 TGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| ||||| || ||| | ||| | || || || || || || ||||| Sbjct 557 TCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAG 616 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||| || | |||| || || ||||| ||| || ||||||| Sbjct 617 ATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTT 676 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || |||| ||||| ||||| ||||| | |||||| ||| Sbjct 677 TCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAACA 736 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 737 AAAATTTGCAT 747 >seq1955 Length=5322578 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || ||||| |||| ||| || || ||||||||||||||||||||| || Sbjct 1861029 CCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAA 1861088 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || || | ||| || || ||||| |||| || || ||||| | ||| Sbjct 1861089 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGA 1861148 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || |||||| ||||||| | | | ||||| || || || Sbjct 1861149 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861208 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || |||||||| || | |||||| ||||| || ||||| Sbjct 1861209 TCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596 || || |||| || | ||| |||||||| || || |||||||| ||||||||||| Sbjct 1860571 TCTCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCT 1860630 Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 | || ||| | || || | || || || ||||| |||| ||| || ||||| | Sbjct 1860631 AAAAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGA 1860690 Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 |||| || || || || |||||| ||||||| | | | || || || || Sbjct 1860691 GGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCA 1860750 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| || ||||| || | |||||| ||||| |||||||| Sbjct 1860751 ACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 >seq182 Length=1849075 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||||||||| || || || | | | || | || || || ||||| || ||||| | Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | || || |||||||| | || | || || || || ||| || ||| ||| Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 122960 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| || || || || | || || ||||| |||||||||||||| |||| Sbjct 122961 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 123020 Query 48757 AAATCTGCATCGTG 48770 | |||||||||||| Sbjct 123021 ATATCTGCATCGTG 123034 >seq2112 Length=2858 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| ||||| || || | || | || || || || || || ||||| Sbjct 355 TCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCTTCTAATTGTTTTCCAGCAAAG 296 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||| || | |||| || |||||||| ||| ||| ||||||| Sbjct 295 ATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATTTTTGCTTTTACATTT 236 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | ||||| ||||| ||||| | ||| || || Sbjct 235 TCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACG 176 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 175 AAAATTTGCAT 165 >seq3153 Length=1268 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || || |||||||| ||||||||||| || || ||| | || Sbjct 1180 AATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGTTCTTCCATCT 1121 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || | || ||||| ||||| |||| ||| |||||||| | |||| || || || || Sbjct 1120 TCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCCTTCTTTATCT 1061 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || |||||| | | || ||||| || || || || | || || ||| Sbjct 1060 TGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTGATGGTT 1001 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || | ||||| |||||||||||||| Sbjct 1000 TTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380900709288558