Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_019782.1 Length=36566 Score E Sequences producing significant alignments: (Bits) Value seq4744 233 4e-57 seq4900 131 4e-26 >seq4744 Length=1121 Score = 233 bits (258), Expect = 4e-57 Identities = 376/539 (70%), Gaps = 1/539 (0%) Strand=Plus/Plus Query 28071 TAATCAAAGAGTCAGGCGTTTATTCATTAATATTCAGCAGTCAAATGCCTAACGCTAAGA 28130 |||| || ||||| || | ||| ||||| | || || |||||||| | ||||||| Sbjct 262 TAATTAACGAGTCTGGTCTCTATAGCTTAATTATGAGTAGCAAAATGCCTGAGGCTAAGA 321 Query 28131 AATTTAAGCATTGGGTAACGTCAGAAGTTTTACCTGCCATTCGTAAGCATGGCGCTTATA 28190 ||||| |||||||| || || || ||||| || ||| | ||||||| || || Sbjct 322 GGTTTAAACATTGGGTTACAAGTGAGGTATTACCAGCTATTAGACAGCATGGAGCGTACC 381 Query 28191 TGACTGATGCAAAAGCTTTTGATGTCATTCACAACAAAAATGGATTAGCTGATTTGCTTC 28250 | ||||| ||||| || ||| | ||| ||||| | || |||||| ||||| Sbjct 382 TTACTGACCAGAAAGCCTTGGATATTATTACTAACAAGGACGGCCTAGCTGGCCTGCTTA 441 Query 28251 AACAAGCGGCAGATCAATTGAAACAAAAAGATATTCAAATTGAAGAAATGAAACCTAAAG 28310 | ||||| || || || | ||||||||||||| |||||| | || ||||||||| Sbjct 442 AGCAAGCTGCTGACCAGCTTGAACAAAAAGATATCCAAATTAAGCGGTTGGAACCTAAAG 501 Query 28311 CATTATTTGCCGATTCAGTAGCAACTAGTAAATCGACTGTGCTAGTTGGTGAGCTCGCAA 28370 | ||||||| ||| |||| || | ||| | ||| | |||||||||| || || | Sbjct 502 CTCTATTTGCAGATACAGTTTCAGCAAGTGATGACACTATCTTAGTTGGTGAACTTGCCA 561 Query 28371 AGATTTTGCGCGGTAACGGCATTGATGTTGGAGCAACTAGATTATTCCGCTGGCTGCGTG 28430 |||||||| || || || | || |||| || ||| | || ||| |||||| Sbjct 562 AGATTTTGAAAGGCAAAGGTGTAAATATTGGCCAAAATAGGCTTTTTAAGTGGATGCGTG 621 Query 28431 AGAATGGCTATCTGATCAATCGGAAGGGCAGTGATTGGAACATGCCAACTCAAAAAGCTA 28490 | ||||||||| |||| || |||| ||||||||| | || | || |||||||| ||| Sbjct 622 ATAATGGCTATTTGATAAACCGGAGGGGCAGTGACCGCAATGTTCCGACTCAAAAGTCTA 681 Query 28491 TGGACTTAGGGCTGTTCAAGATTAAGGAGACAACCATTAATCACCCAGATGGCACTACTT 28550 |||| | || || ||| ||||||| || ||| || ||||| || ||||| | | Sbjct 682 TGGAAATGGGACTATTC-AGATTAAAGAAACAGTAATCAATCATCCTGATGGTAAGCCAA 740 Query 28551 CAATCAGCAAGACGCCAAAGGTGACCGGCAAAGGTCAGCAATACTTTATCAACAAGTTC 28609 || || ||||||||||| || || || ||||| |||| || ||| | |||||| || Sbjct 741 GTATTAGAAAGACGCCAAAAGTAACTGGTAAAGGCCAGCGCTATTTTGTGAACAAGCTC 799 >seq4900 Length=509 Score = 131 bits (144), Expect = 4e-26 Identities = 199/277 (72%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 35021 ATGTTCCGTATTTAGAACTAATGTAGGTAAAGTGCAAACAATAGATCATCGTTGGTTTGG 35080 |||| | || ||| | |||||||| || ||||| || | || | ||||||| Sbjct 145 ATGTACGGTGTTTCGTACTAATGTTGGAAAAGTTTTAATGGAAAATGGCAGGTGGTTTGA 204 Query 35081 CACGGGTTTACCTCAAGGCTTTCCTGATCT-TATGGGTTTTCGTTGGGTAGATAATCAAA 35139 |||||| |||||| |||| ||| ||||| ||||| ||| |||||||| ||| ||||| Sbjct 205 CACGGGATTACCTAAAGGACATCC-GATCTATATGG-TTTCCGTTGGGTTGATGATCAAG 262 Query 35140 TATGTTTTATCGAAGTTAAATCCAAAACAGGTAAGCCTAGAGAAGATCAAATTCGTTTTC 35199 ||| | ||||||||||||||| ||| || ||||||||| || || ||| ||||| Sbjct 263 TATTCTATATCGAAGTTAAATCAGCAACTGGCAAGCCTAGACCGGAACAGATTATTTTTC 322 Query 35200 ATGAGTTTCTTGCA-TCTCATGGTGTAATTCATGGAATTGCACGAAGCGTTCAAGACGCT 35258 || | ||| ||| | ||| |||||||||||| ||||| |||| |||| || Sbjct 323 AT-AATTTTTTGAACAGTCACAATGTAATTCATGGTATTGCTAGAAGTACAAAAGATGCA 381 Query 35259 CTAATGATAATTGATGGAGGTTTGTGTGGATTTGGAT 35295 |||||||| | ||||| || || |||| ||||| Sbjct 382 TTAATGATAGTAGATGGGGGGTTAGTAGGATATGGAT 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116878570443456