Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3153 118 9e-22 seq7885 109 5e-19 seq2112 104 2e-17 seq1955 96.9 3e-15 seq4594 87.8 2e-12 >seq3153 Length=1268 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || |||||||| || ||| ||| ||||| Sbjct 969 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 1028 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| || ||||| ||| | || ||||||| Sbjct 1029 GATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 1088 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | |||||||| || |||||| | |||||| | ||| | | ||||| || Sbjct 1089 CAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAAT 1148 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||||||||||||| || || | ||||||||| | |||||||| || Sbjct 1149 ATCCAAAAAGAATCTACACTCCATTTAGTATTAAGACTTCGAGGAGGTAT 1198 >seq7885 Length=810 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | ||||||||||| ||||| ||| ||| |||| Sbjct 747 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCC 688 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || |||||||| || | || || || Sbjct 687 GATACCATTGAAAATGTAAAAGCCAAAATTCAA-GACAAAGAAGGTATTCCTCCCGACCA 629 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||| | |||||||| || |||||||| |||||| | ||| | |||||||||| Sbjct 628 ACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTATAA 569 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||||||||||| || || || Sbjct 568 TATTCAAAAAGAATCAACCCTCCA 545 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/205 (70%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | ||||| |||||||| || || ||| |||| Sbjct 519 ATGCAAATTTTCGTTAAAACTCTTACGGG-AAAACCATCACTCTGGAGGTTGAAGCTTCC 461 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| || || || || | || |||||| Sbjct 460 GATACTATTGAAAATGTTAAGACTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 401 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 |||||||| |||||||| || |||||||| |||||| || | ||| | | ||||||| Sbjct 400 CAGAGACTGATCTTTGCAGGAAAACAATTAGAAGATGGTCGTACACTTTCG--GATTATA 343 Query 28732 ACATTCAAAAAGAATCTACTCTGCA 28756 |||| || |||||||| ||||| || Sbjct 342 ACATCCAGAAAGAATCAACTCTTCA 318 >seq2112 Length=2858 Score = 104 bits (114), Expect = 2e-17 Identities = 154/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || | ||||||||||| ||||| ||| ||| |||| Sbjct 164 AATGCAAATTTTCGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTC 223 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || ||||||| || ||||| || || | || || | Sbjct 224 CGATACAATTGAAAATGTAAAAGCAAAAATTCAA-GACAAGGAAGGTATTCCACCTGACC 282 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTA 28729 |||||||| | |||||||| || |||||||| |||||| | | ||| | ||||||| Sbjct 283 AACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGACGTACACTTT--CCGATTA 340 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 ||| |||||||||||||| ||||| ||| | ||| Sbjct 341 TAATATTCAAAAAGAATCGACTCTTCACCTTGTA 374 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 |||| |||| || |||||||| || | || |||||||| ||| | || ||||| Sbjct 16 AAGCCAAAATTCAA-GACAAAGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGCT 74 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || ||||||||||||||| ||| | |||||||||| ||||||||||||||||| Sbjct 75 GGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTCAAAAAGAATCTACA 134 Query 28752 CTGCA 28756 || || Sbjct 135 CTTCA 139 >seq1955 Length=5322578 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || ||||||||||| ||| ||| |||| Sbjct 1861481 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCG 1861422 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || || | || || ||||| ||| | || |||||| Sbjct 1861421 GACACAATAGAAAATGTAAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCAGATCA 1861363 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | |||||||| || ||||| | |||||| | |||| | | |||||||| Sbjct 1861362 GCAACGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCT--CAGATTATAA 1861305 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||||||||||||| || || | || || ||| | |||||||| || Sbjct 1861304 TATCCAAAAAGAATCTACACTCCATTTAGTGTTGAGACTTCGAGGAGGAAT 1861254 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || ||||| || || ||| ||| |||| Sbjct 1861256 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTC 1861197 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| || | | || | || || || | || || ||||| ||| | || |||| Sbjct 1861196 AGACACAATAGAAAATGTAAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCACCTGATC 1861138 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | || | | || ||||| |||||||| | |||||| | |||| | | ||||| | Sbjct 1861137 AGCAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACA 1861078 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | ||||||||||| |||||||| || ||||||| || | || ||||| || Sbjct 1861077 ATATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGGAAT 1861026 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| | || || || || ||||| ||| ||| |||| Sbjct 1860801 AATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 1860742 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || || || | || || ||||| ||| | || |||| Sbjct 1860741 GGATACAATAGAGAATGTAAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCTGATC 1860683 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | || || | || ||||| ||||||||| | |||||| | ||| | ||||| | Sbjct 1860682 AGCAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTTTAGATTACA 1860623 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | || |||||||||||||| ||||| ||||||| ||| | || ||||| Sbjct 1860622 ATATCCAAAAAGAATCTACACTGCATTTGGTATTGAGACTTCGGGGAGG 1860574 >seq4594 Length=760 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742 |||||||| || |||||| | |||||| | |||| | | |||||||||||||| ||| Sbjct 750 ATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACATTCAGAAA 691 Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATA-ATAAT 28789 |||||||| || ||| | || || ||| | |||||||| ||| ||||| Sbjct 690 GAATCTACACTTCACTTAGTGTTGAGACTTCGAGGAGGAATATATAAT 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425363603001534