Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1429 125 4e-24 >seq1429 Length=9113309 Score = 125 bits (138), Expect = 4e-24 Identities = 212/305 (70%), Gaps = 8/305 (3%) Strand=Plus/Minus Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058 ||| ||||| ||||||| || ||||||||||||| ||||||||||||||||| ||||| Sbjct 7665251 ATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAATATATAGC 7665192 Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 ||| || |||||| ||| |||||||| || |||| || || | |||| | || Sbjct 7665191 AAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATAC 7665132 Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT----GCTATGAATCTTGGATC 26174 | | | |||||||| || ||| | || | || ||| ||||| | || | | Sbjct 7665131 TCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTAT---TGGTGTA-C 7665076 Query 26175 CTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTG 26234 || | | || |||| || ||| || || || |||||||| |||| ||| || Sbjct 7665075 CTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTACTAATGAGTG 7665016 Query 26235 CACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAA 26294 | || | | ||||||| ||||||||| || ||||| | ||||| |||||||| Sbjct 7665015 CGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGTTAATAAAA 7664956 Query 26295 AACAA 26299 ||||| Sbjct 7664955 AACAA 7664951 Score = 116 bits (128), Expect = 2e-21 Identities = 132/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 ||| ||||| |||| |||||||||| | | | || ||| ||||||| | | |||| Sbjct 7667243 AAACTCTCCTGACAGAACTCTTCTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTC 7667184 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 |||||||||||| ||||| | || |||||||||||||| ||| ||||| | ||||| Sbjct 7667183 ATTATTTCCTAAAATTTGTGCTGTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATT 7667124 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC---TAAATTA 25186 ||| | ||||||||| |||| | || |||||| || |||||| ||||||| Sbjct 7667123 TCTAACTCCATATTTAGCAAT-TTTTTTTTTAAAATAGTCCAATCCCATAAATTA 7667070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253015495131950