Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5476 102 2e-16 seq2691 102 2e-16 seq1351 102 2e-16 seq2501 95.1 4e-14 seq1883 87.8 5e-12 seq2024 86.0 2e-11 seq1055 86.0 2e-11 >seq5476 Length=1777 Score = 102 bits (112), Expect = 2e-16 Identities = 142/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 ||||||||||| || || || || | || || | ||||| | ||| ||| ||||| Sbjct 305 GCATCAATTTCATCGATAAAGATAATACTTGGTGCATTTTTCTTAGCA-TTGGTAATAAA 247 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 || | |||||| || |||| ||| ||| ||||||||||||| || ||| | || | | Sbjct 246 TCACGTACACGACTGGCACCAACACCGACAAACATTTCTACAAAGTCTGAACCAGA-AAT 188 Query 289156 TGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 ||| | |||| |||||| ||||| || || ||||||| ||| || | |||||||| || Sbjct 187 TGAGAAAAATGGTACATTGGCTTCACCAGCAACTGCCCGCGCAAGTAAGGTCTTACCAGT 128 Query 289215 TCCAGGTGGTCCCTC 289229 || || || || || Sbjct 127 ACCCGGAGGACCTTC 113 >seq2691 Length=2742322 Score = 102 bits (112), Expect = 2e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| || ||||||||||| ||||||||||||||| | ||||||||||| || Sbjct 2708013 TTCCATAGCTTTTATTAAACGACGTTGAATATAACCAGTTTCTGCAGTTTTTACAGCAGT 2708072 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 ||| || ||||| ||||||||||||||||||| || Sbjct 2708073 ATCGATAAGACCTTCACGACCACCCATAGCATGAAA 2708108 >seq1351 Length=4085110 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| | ||||| ||||| ||||| ||||| || | | ||| |||| || || || Sbjct 2649730 CTTTTTCTTCCAACGGCATCGATTTCATCAATAAATAATATACATGGAGCATGTTTTCGT 2649671 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | |||||| | |||| || | |||| |||| |||||| ||||||| | |||| Sbjct 2649670 GCTAATGCAAACATATCTCGAACTCTTGATGGACCAACACCAACGAACATTTCCAAAAAT 2649611 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| | || || ||| || | |||||||||||| || ||| || | || | Sbjct 2649610 TCCGAACCTGACACACTAATAAAAGGTACATTTGCTTCACCAGCTGTGGCTTTAGCTAAT 2649551 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||| ||||| || || ||||| || Sbjct 2649550 AATGTTTTACCAGTCCCGGGTGGACC 2649525 >seq2501 Length=2863240 Score = 95.1 bits (104), Expect = 4e-14 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 289129 ATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACT 289188 |||||| ||||||| | | | | | |||| |||| |||| ||||| || |||||| Sbjct 835756 ATTTCTTCAAATTCTGGTCCAGCTGCATGAAAAAATGGTACACCAGCTTCACCAGCTACT 835697 Query 289189 GCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGT 289248 || || || | | |||||| |||||||| |||||||| |||||| || || || ||| Sbjct 835696 GCTCTAGCTAATAATGTCTTTCCTGTTCCTGGTGGTCCTACTAATAATACACCTTTAGGT 835637 Query 289249 ACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC- 289304 | ||||| ||| || || | |||| || || | ||||||||||| ||||| || Sbjct 835636 AGCTTTGCGCCAAGTGCTGA---AAATTTTTCTGGATTTTTTAAAAATTCGACAATATCA 835580 Query 289305 CTCAAGTTCATATTTTGCCTC 289325 || || ||| | ||| || || Sbjct 835579 CTTAA-TTCTTGTTTAGCTTC 835560 >seq1883 Length=454209 Score = 87.8 bits (96), Expect = 5e-12 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 380906 AAGAACTACTATGGTTTATTAAGGGTGATACATCAAAC---AGAAGGCTAAAGGCACAGA 380962 ||||| || ||||||| ||||| || || || |||| | || ||| | | || Sbjct 61093 AAGAATTATTATGGTTCATTAATGG--ATCCA-CAAATGCTAAAAAATTAAGCGAAAAGG 61149 Query 380963 ATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCA 381022 |||| | || ||| ||| ||| || |||||||| |||||||| ||||| | || Sbjct 61150 ATGTTCATATTTGGGATGCGAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAG 61209 Query 381023 ATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTT 381075 ||| ||||||| || | ||||||||||| |||||||| |||||||||||| Sbjct 61210 ATAGGGAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTT 61262 >seq2024 Length=8919894 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 133434 AATTT-CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGT 133492 ||||| || ||| || ||| ||| || | ||||| | || ||||| | | | || Sbjct 2396491 AATTTGCCATGTGTTGCAAAAAAAGCTCATTGGGCGTTAAATTGGATAAATCATGAAAGT 2396432 Query 133493 GCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGT 133552 || | |||| || ||| | ||||||||||||| |||||| || ||||| || |||||| Sbjct 2396431 GCCACTTTTCCTGAACGTGTGGTTGCTTTTGCTGCAGTAGAAGGTATTTTCTTTAGTGGT 2396372 Query 133553 GCGTTCTG-CTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611 ||| || | ||||||| ||| | ||||| | ||| || | || ||||| ||| Sbjct 2396371 -AGTTTTGCCGCTATTTTCTGGTTAAAAAAAAGAGGTCTTATGCCAGGACTTACATTTAG 2396313 Query 133612 TAACGAACTTATTTCAAGGGACGAGG 133637 || || |||||||| || || |||| Sbjct 2396312 CAATGAGCTTATTTCTAGAGATGAGG 2396287 >seq1055 Length=2524637 Score = 86.0 bits (94), Expect = 2e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||| | |||| | ||||| |||||||||||||| | | | |||||| || | Sbjct 2372400 TAGCACCATATCCAATTAAGCAATCTCGTTCCATTTCACCTAATCTTAAACCACCTTCCT 2372341 Query 233331 TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 | | | ||| | || |||||| ||||| |||| ||| || || |||||||| || Sbjct 2372340 TGGCTCGACCTCCGGTTGGTTGACGCGTTAATACAGCTCTCGGCCCTCGAGCACGAGCAT 2372281 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 |||||||||| |||||||| |||| | | |||||| Sbjct 2372280 GCATTTTATCTTGTACCATATGTTTCAATTTTTGATAATA 2372241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471667757009802