Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq282 206 2e-48 seq1955 118 9e-22 seq3153 104 2e-17 seq7885 89.7 4e-13 >seq282 Length=5581854 Score = 206 bits (228), Expect = 2e-48 Identities = 284/395 (72%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACGA 34312 ||||||||||| ||||||||||| ||||| | ||| || | |||| || || || | Sbjct 500904 CCGTGATAACCACATGCTTTGCATCCCTGTGAAATA--GTCCCTTTTTTCGAACTGACCA 500961 Query 34313 TGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCAT 34372 | | || ||||| || || || || |||| || || ||| | ||||| ||||| |||| Sbjct 500962 TCAATTCGGTCTCAGGATTATCGCAAGCCGGGCATAATACATATTTGCGAATGAATCCAT 501021 Query 34373 CAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTT 34432 | | || || || || || | ||||| || || || || || |||| ||| |||| Sbjct 501022 CCAAAAGATCTTGCAATTTTGTAGCATCGTGCGAACCATTTACTATAAATCTTTCATTTT 501081 Query 34433 TGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGG 34492 || |||||| || ||||| || || |||||||| || ||||| || || || || ||| Sbjct 501082 TGAAATCGAATTGAGTTTGTGCTCCGAGCTCGCAACCAAAGTATTTAGTAGGATAGGTGG 501141 Query 34493 CCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGT 34552 | || | ||||| ||| || |||| || ||| || ||||| || || ||||| || | Sbjct 501142 CAGGTCTTCCAATCGCTTTCGCGACATCAACCATATTCACGATCACGGTTTTGATACCAT 501201 Query 34553 TGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612 | ||||| ||||| || ||||| || || |||||||| || || || ||||| || Sbjct 501202 TTCCCTTGCCTTCTACTTTGGCTTGAATCCGTGGCATTTTATACCGATAAAACGCATCGC 501261 Query 34613 CCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 ||||| || || ||||| ||| ||||||| ||| Sbjct 501262 TGACATTACGATTTACGTTGACACTCCCCATGGTG 501296 >seq1955 Length=5322578 Score = 118 bits (130), Expect = 9e-22 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||| | || |||||||||||||| | ||| || || Sbjct 1861481 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCG 1861422 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | |||||| |||||| || |||||||| | || ||||| Sbjct 1861421 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAG 1861362 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | || | ||| ||||||||||| || |||| ||||| | | ||||| || Sbjct 1861361 CAACGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAAC--TCTCAGATTATAAT 1861304 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || |||||||||||||| | || | ||||| ||||| ||||| |||| Sbjct 1861303 ATCCAAAAAGAATCTACACTCCATTTAGTGTTGAGACTTCGAGGAGGAA 1861255 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| |||||| | || || || || ||||| | ||| || || Sbjct 1860801 AATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 1860742 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | |||||| |||||| || |||||||| | || ||||| Sbjct 1860741 GGATACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 1860682 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || | |||| ||| || ||||| || || |||| |||||| | |||||||| Sbjct 1860681 GCAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTTTAGATTACAA 1860622 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 || |||||||||||||| |||| |||| || ||||| || || ||| Sbjct 1860621 TATCCAAAAAGAATCTACACTGCATTTGGTATTGAGACTTCGGGGAGGA 1860573 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | || || ||||| || || | ||| || || Sbjct 1861256 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTC 1861197 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | |||||| |||||| || |||||||| | || ||||| Sbjct 1861196 AGACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCA 1861137 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | |||| ||| || |||||||| || |||| ||||| | | |||||||| Sbjct 1861136 GCAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAA 1861077 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||| ||||| | || |||| || |||| || || |||| Sbjct 1861076 TATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGGAA 1861027 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | || || ||||| || || | ||| || || Sbjct 1861710 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTC 1861651 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | ||||| |||||| ||||||||||| | ||| || || Sbjct 1861650 AGACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 1861591 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| |||||||| | || |||| ||||| | | ||||| || Sbjct 1861590 GCAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTATAA 1861531 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| |||||||| | || | || || ||||| ||||| || Sbjct 1861530 TATCCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTCGAGGAGG 1861483 >seq3153 Length=1268 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| |||| || |||||||| || | ||| || || Sbjct 969 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 1028 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | ||||| || || || |||||||| | || |||||| Sbjct 1029 GATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 1088 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | || | ||| |||||||| || || |||| |||||| | | |||||||| Sbjct 1089 CAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAAT 1148 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||||||||| | || | || |||||||| ||||| || Sbjct 1149 ATCCAAAAAGAATCTACACTCCATTTAGTATTAAGACTTCGAGGAGG 1195 >seq7885 Length=810 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| |||||| | || || ||||| ||||| | ||| || || Sbjct 292 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 233 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| || || ||||| | || ||||| Sbjct 232 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 173 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| ||||||||||| || |||| | ||| | ||||||| || Sbjct 172 CAGAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACACTTTCGGATTATAAT 113 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 112 ATTCAAAAAGAATCAAC 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412801619645378