Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_022775.1 Length=36969 Score E Sequences producing significant alignments: (Bits) Value seq5973 116 9e-22 seq6643 102 2e-17 seq1039 91.5 3e-14 seq6528 80.6 6e-11 >seq5973 Length=934 Score = 116 bits (128), Expect = 9e-22 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 15796 TTGATGGGTGTGGTGGCTAAAGCCGCCAATCCCAACACTAAATTTGACTGGGTCTTGGAC 15855 || ||||||| ||||| |||| || | | |||||||| || | || | || Sbjct 483 TTCATGGGTGCAGTGGCCAAAGTTTATAACGCAGATACTAAATTCGATTACGTGCTTGAT 424 Query 15856 CTGGTCGGTGGTCAAGGTGTGGGGAAGACCACATTACTGATGAAGCTGGCACCGCCAGGT 15915 | |||||||||||||| || || ||||| || | |||| || | ||||||| || Sbjct 423 TTAGTCGGTGGTCAAGGCGTTGGTAAGACTTCAATTCTGAAAAACATTGCACCGCTGGGA 364 Query 15916 ACCTACACGGACCAATTCTTAAGCTTTACGGACAAAGACGACTTCGCAGCCATGCGAAAC 15975 ||||||||||||||| | ||| ||| | |||||||| |||| || ||| || Sbjct 363 CTTTACACGGACCAATTCAATACCTTCACGAAAAAAGACGATTTCGAAGTTATGAAGAAT 304 Query 15976 GCTTTGATCGTCAACGATGACGAAATGACGGTGTCAAATCGGACTTCTTTTGAAGAAATT 16035 || |||| || || ||||| |||||||| | ||| | |||||||||||| Sbjct 303 GCACTGATTGTGAATGATGATGAAATGACCGCCAGCAATGATGCCAGTTTTGAAGAAATC 244 Query 16036 AAAAAATTCATCACCATGAAAGAGTTC 16062 ||||||||||| |||||| | || ||| Sbjct 243 AAAAAATTCATTACCATGCAGGATTTC 217 >seq6643 Length=1511 Score = 102 bits (112), Expect = 2e-17 Identities = 325/496 (66%), Gaps = 36/496 (7%) Strand=Plus/Minus Query 14502 GAAAACTTAGTTAACTACGCGAAAAGCTATGCATCACATGGCTTTAGCGTAATCCCAATT 14561 ||||| |||| || ||||| | || ||||| ||||| || ||| ||||| || ||| Sbjct 793 GAAAATCTAGTCAATTACGCAATTAGTTATGCTTCACACGGATTTTCTGTAATACCTATT 734 Query 14562 GT---GAATAAACGACCTTTAATCAAGTTTGCCAACAGACCAGCTTTAACCAAAGAGGAG 14618 | || |||||||| || || |||||||| || |||| | | || ||||| || Sbjct 733 GGTGCGACCAAACGACCATTGATTAAGTTTGCTAATCAACCACCACTTACTAAAGATGA- 675 Query 14619 ATTGATGCCATTTGGACCAAGC-ATCCAACGGCATCGATTGCCTTGCAGACACGTGAGTT 14677 ||| | | ||| | | || ||||| ||| ||||| | ||||| | | || Sbjct 674 ATTAAACAGGTATGG-CAACGCTATCCACTCGCAAACATTGCTCTTAAGACAGATAAATT 616 Query 14678 CTTGGTCATTGATGTCGACCGTCACGAAGGCGGTGACGGCATGGAATCAATCAAAGCCCT 14737 || || |||||||| ||| | || | | | |||||||||||| | ||||| | Sbjct 615 TTTCGTGATTGATGTTGACAGACATGGTGAAGTTGACGGCATGGATGCCATCAAGCAATT 556 Query 14738 GGGCCATAACGAATGGTTCAAGGACACGCTTTGCGAGAGAACT-CACTCCGGCGGTTTTC 14796 |||||||| |||||||| | || | || | |||| ||| | || |||| Sbjct 555 AAATCATAACGAGTGGTTCAAAGGTACATTAACTGAAAAAACTGCACAT-GATGGCTTTC 497 Query 14797 ACTTCTACTTCAGGAAACCTGCCAAGCAGGAAATCA---CACAAAACATCGGCTTTTTGC 14853 | |||| ||| ||||| || | |||| || | ||||| ||||| || |||| Sbjct 496 ATTTCTTCTTTCAAAAACCG---AAAAATGAAACCATTGCGCAAAATATCGGTTTCTTGC 440 Query 14854 CACATGTTGACCTCAAGGCCCACGACAATAACTACGTGGTGGTAGCTCCCAGTCCAG--- 14910 | ||||| | ||||| ||||| || || |||||||||||||| || || |||| Sbjct 439 CTGGAGTTGATTTGAAGGCACACGAAAACAATTACGTGGTGGTAGCGCCGAG-CCAGATT 381 Query 14911 ----------GCTACAAGTGGCTTAATCACAAGCCTA----TCCAGCCTTTGCCAGACGG 14956 |||||| |||||||||||| | || ||||||| ||||| || Sbjct 380 AATGGCAAACACTACAAATGGCTTAATCACGATATTATTCGTCCAGCC----CCAGAAGG 325 Query 14957 CTTGCTGGAGCTAATC 14972 ||||||| || ||| Sbjct 324 GCTGCTGGAACTGATC 309 >seq1039 Length=4247 Score = 91.5 bits (100), Expect = 3e-14 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 5577 ATCGTCAAGCGGTATGGGACTTGCCTCTGGGTAGCTTCCTACCCCACAATGGCGGCAGTC 5636 ||||||||| ||||| | ||| | ||||| || ||| || |||||||| |||||| Sbjct 1090 ATCGTCAAGACATATGGCAACTGCTTATGGGTGGCAAGCTATCCGACAATGGCAGCAGTC 1031 Query 5637 TCATCAGCAGACTTCGGCTACTTCCCATCTATGGACGGGGTGGCCATCTGGCAGTTTACG 5696 || || || | | |||||| ||| |||||||| || ||||||||||| ||||| Sbjct 1030 AACTCTGCTAACATGGCCTACTTTCCAAGCATGGACGGTGTTGCCATCTGGCAATTTACT 971 Query 5697 TCAAACTGGCACGGACTGAACGTGGACGGCAAT 5729 |||| ||||||||||| ||||||||| Sbjct 970 AGCAACTATAGGGGACTGAACGTTGACGGCAAT 938 >seq6528 Length=1832 Score = 80.6 bits (88), Expect = 6e-11 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 11877 TGGCCACCATCAAATTATAGTGCAAAGCCCGCCAAGAACGGGCAAGACGGTGGTGATGGC 11936 ||| |||||||| || || ||||| || ||| |||| || |||||||| |||||||| Sbjct 1090 TGGTCACCATCATATAATCGTGCAGTCACCACCACGAACTGGTAAGACGGTCGTGATGGC 1031 Query 11937 AGAGATCGCCAGGCGGACGACCGATAAGGGCAACAGGGT-TTGCTTTATCATCCACCGCA 11995 |||||| || || || || || | |||| ||| | || || |||| || || || | Sbjct 1030 AGAGATTGCTAGACGAACAACTGCTAAGAATAACCGAGTGATG--TTATTATTCATCGAA 973 Query 11996 AGGAAGTGCTGGAACAGGCAAAAGCTACCTTCCAA 12030 | ||||| |||| || || |||| || ||| || Sbjct 972 AAGAAGTATTGGATCAAGCTAAAGAAACATTCAAA 938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118168048758412