Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1883 131 2e-25 seq317 102 1e-16 seq2024 93.3 5e-14 >seq1883 Length=454209 Score = 131 bits (144), Expect = 2e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 168526 AAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 168585 ||||| | |||||| | || || || || || || | ||| |||||| || | | || Sbjct 61093 AAGAATTATTATGGTTCATTAATGGATCCACAAATGCTAAAAAATTAAGCGAAAAGGATG 61152 Query 168586 TTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAA 168645 || | ||||| | | ||| |||| ||||| || ||||||| ||||||||||| || | Sbjct 61153 TTCATATTTGGGATGCGAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATA 61212 Query 168646 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 168692 | ||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 61213 GGGAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 61259 >seq317 Length=4095164 Score = 102 bits (112), Expect = 1e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 163001 AAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAA 163060 || ||||| ||||| ||| | ||| || ||||| ||| ||| | || || ||| Sbjct 4026342 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCATCATGGAGAAGTT 4026401 Query 163061 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 163119 | |||||| || |||| ||||| |||| ||| |||| || || | ||||| ||| Sbjct 4026402 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAACATAAA 4026460 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 163179 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | ||| Sbjct 4026461 TTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCGAG 4026520 Query 163180 ATCAAGATATATTTATACCAAACCAAATAAAATATTAAAATATATATTTA 163229 | ||||||||| ||||| | | | ||||| | |||||||| || Sbjct 4026521 TCCTCGATATATTTTTACCATGCTTAGGTATATATTTATATATATATATA 4026570 >seq2024 Length=8919894 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||||| || |||| || ||||||||| |||| | |||| | | ||||| |||||||| Sbjct 8293622 CGTATTCCACAAATCGGTGATAAATTTGCTTCACGTCATGGAC-AGAAAGGTACTTGTGG 8293564 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || ||| ||||||||||||||||||| || | |||| | |||||| ||||| Sbjct 8293563 AATTCAATATAGACAAGAAGATATGCCATTTTCATGTGAAGGTCTTACACCAGACATTAT 8293504 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||| || |||||||| | ||||| ||| ||| | |||| Sbjct 8293503 AATTAATCCTCATGCAATTCCATCACGTATGACTATTGGTCACTTAATTG 8293454 Score = 93.3 bits (102), Expect = 5e-14 Identities = 186/270 (69%), Gaps = 7/270 (3%) Strand=Plus/Minus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCAC-AGATA 192984 || ||| || || | ||| |||| ||||||| || ||||| | || || || |||| Sbjct 8294248 AATGGATACTTTAGCACATGTATTATATTATCCTCATAAACCTTTGGTAACTACTAGATC 8294189 Query 192985 T-TGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | || || || | | | || | |||| || ||| ||||| ||| ||||||||| Sbjct 8294188 TATGGAATATCTTAGAT-TTCGTGAATTA-CCTGCTGGAATTAACAGTATAGTTGCTATA 8294131 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAA 193103 || ||||||||||||||||||||||| ||| |||| |||||| | || ||||| Sbjct 8294130 TTATGTTATACTGGTTATAATCAAGAAGATAGTGTTATCTTAAATGCTAGTGCTGTTGAA 8294071 Query 193104 AGAGGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAA---ACAAAAAAT 193160 ||||| || ||| | || || ||||| | |||| || | |||| | || || | Sbjct 8294070 AGAGGTTTCTTTCGATCTGTATTTTATAGATCTTATAAAGATTCAGAATCTAAAAGAATT 8294011 Query 193161 GGAATTATAGAAGAAAAAATAGATATACCT 193190 ||| | ||||||| || | || | |||| Sbjct 8294010 GGAGATCAAGAAGAACAATTTGAAAAACCT 8293981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114510984880