Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1883 116 5e-21 >seq1883 Length=454209 Score = 116 bits (128), Expect = 5e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 180426 AAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAATGATATTGGTG 180485 |||||||||||||| | || || || | |||||| |||| |||| || | | || Sbjct 61093 AAGAATTATTATGGTTCATTAATGGATCCACAAATGCTAAAAAATTAAGCGAAAAGGATG 61152 Query 180486 TTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTTC 180545 || | | ||| ||| ||| |||| ||| |||| |||||||||||||| ||| | Sbjct 61153 TTCATATTTGGGATGCGAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATA 61212 Query 180546 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACAT 180592 | ||||||| |||||||| || |||||||||||||||||||||||| Sbjct 61213 GGGAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 61259 Score = 104 bits (114), Expect = 3e-17 Identities = 168/236 (71%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 180637 AGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCC-GAA 180695 |||||| || ||||||| |||||||||| | ||| | || |||| |||| ||| Sbjct 61386 AGGTATTGATCAATTAAAAGAAGTTATAGATAAGATACGATATTCTCCC-AATGATAGAA 61444 Query 180696 GAATAATCATAGATAGT-TGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGT 180754 |||| || || || || |||||| | | | ||| | |||||| | || || ||| Sbjct 61445 GAATTATAAT-GACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCTCCTTGT 61503 Query 180755 CACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAA 180814 || ||||| || ||||||||||| || ||| || | ||| |||||| | |||||| Sbjct 61504 CATTGTTTTGTTCAATTTTATGTAAGCAATGAA---GAATTATCATGCCAACTTTATCAA 61560 Query 180815 AGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTCATTTTT 180870 ||| ||| ||| | || | |||||||||| ||||||||| | ||||| || || Sbjct 61561 AGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCTTTATT 61616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655214914314000