Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1883 131 2e-25 seq317 105 8e-18 seq2024 84.2 3e-11 seq2691 82.4 1e-10 >seq1883 Length=454209 Score = 131 bits (144), Expect = 2e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 ||||| | |||||| | ||||| || || || || | ||| |||||| || | | || Sbjct 61093 AAGAATTATTATGGTTCATTAATGGATCCACAAATGCTAAAAAATTAAGCGAAAAGGATG 61152 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 || | ||||| ||| ||| |||| ||||| || ||||||| || || ||||| || | Sbjct 61153 TTCATATTTGGGATGCGAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATA 61212 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 171777 | ||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 61213 GGGAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 61259 >seq317 Length=4095164 Score = 105 bits (116), Expect = 8e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 165163 AAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACAA 165222 |||||||| ||||| ||| | ||| || ||||| ||| ||| | ||||| ||| Sbjct 4026342 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCATCATGGAGAAGTT 4026401 Query 165223 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | |||||| || |||| ||||| |||| ||| |||| || || | ||||| ||| Sbjct 4026402 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAACATAAA 4026460 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 165341 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | ||| Sbjct 4026461 TTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCGAG 4026520 Query 165342 ATCAAGATATATTTATACCA 165361 | ||||||||| ||||| Sbjct 4026521 TCCTCGATATATTTTTACCA 4026540 >seq2024 Length=8919894 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 ||||| || |||| || ||||||||| ||| | |||| | | ||||| |||||||| Sbjct 8293622 CGTATTCCACAAATCGGTGATAAATTTGCTTCACGTCATGGAC-AGAAAGGTACTTGTGG 8293564 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 || ||| ||||||||||||||||||| || | |||| | |||||| ||||| Sbjct 8293563 AATTCAATATAGACAAGAAGATATGCCATTTTCATGTGAAGGTCTTACACCAGACATTAT 8293504 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 |||||||| || ||||| || | ||||| ||| ||| | |||| Sbjct 8293503 AATTAATCCTCATGCAATTCCATCACGTATGACTATTGGTCACTTAATTG 8293454 >seq2691 Length=2742322 Score = 82.4 bits (90), Expect = 1e-10 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 50319 AGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAG 50378 |||||| ||| ||| | || ||| | ||||| ||| | |||||| |||| | Sbjct 2709267 AGATGGCGATTTAGTAATTTTCAATCGACAACCGACATTACATAAAATGAGTATGATGGG 2709208 Query 50379 TTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAAT-TTAGCTATGACTAAAG 50437 | || ||| ||| || |||| | |||||| |||||| |||| | || | Sbjct 2709207 TCATAGAGTAAAAGTTTTACCATGGAGTACATTTCGTATGAATCTTAGTTGC-ACATCAC 2709149 Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 |||||||||| ||||| ||||| ||||||||||||||||||| || |||||| |||||| Sbjct 2709148 CATATAATGCCGATTTCGATGGTGATGAAATGAATTTACATGCCCCACAATCA-ATGGAG 2709090 Query 50498 -CTACTGCTGAATTACAA 50514 || ||| ||| || || Sbjct 2709089 ACTCGTGCAGAAGTAGAA 2709072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628468771138560