Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq1016 407 5e-108 seq3696 178 4e-39 seq1955 93.3 1e-13 >seq1016 Length=4402 Score = 407 bits (450), Expect = 5e-108 Identities = 683/975 (70%), Gaps = 24/975 (2%) Strand=Plus/Plus Query 69097 TTTGATTATGAAGATATTCAATTGGTACC-AGCAAAGTGTATAGTTGAGAGCCGTTCCGA 69155 |||||||| || ||||||||| | || || | ||||| | || | | |||||| || Sbjct 694 TTTGATTACGATGATATTCAACTTGTTCCTAACAAAG-GAATCATCAAAAGCCGTCATGA 752 Query 69156 GTGTGATACATCTATTAGTTTAGGGAATCGAAAATTTAAATTACCAGTAGTTCCATCTAA 69215 ||||| | ||| || || || |||| ||||||| | || || |||||| |||| Sbjct 753 TGCGGATACTAGTGTTAAGTTTGGAAACCGAACATTTAAAATCCCGGTTGTTCCAGCTAA 812 Query 69216 TATGCAAACGATTATTGATGAGAAAATAGCTGCTTATTTAGCNNNNNNNGGCTATTTCTA 69275 ||| | | | ||| |||| | | ||| || | || ||||||| ||| Sbjct 813 CATGGAGAGCGTCATTAATGACGAGTTGGCTATTTGGCTTGCGCAAAACGGCTATTACTA 872 Query 69276 TGTAATGCATAGATTTGAACCCGAGACTAGACTTGATTTTATTAAAGATATGCA---AAC 69332 ||||||||| | ||| |||| || | | || ||||| || ||| ||||| || Sbjct 873 TGTAATGCACCGCTTTCAACCTGAAAAGCGGCTCGATTTCATCAAAATGATGCATGAAAA 932 Query 69333 TCGCAACTTATATGCTTCTATTAGTGTTGGTGTAAAAGAAGAAGAGTATCAATTTATTAA 69392 || ||| | |||||| ||| ||| ||| | || | || || ||| | |||||| | Sbjct 933 AGGC--CTTTT-TGCTTCAATTTCTGTCGGTATTAAGAAGGACGAATATAACTTTATTGA 989 Query 69393 TCAATTAGCTGATGAAAAACTTGTTCCAGAATATATCACTATTGATATAGCTCACGGACA 69452 ||||||||| | ||||||| | ||||| ||||| || || |||||| | || ||||| || Sbjct 990 TCAATTAGCAGCTGAAAAAATCGTTCCCGAATACATTACGATTGATGTTGCACACGGCCA 1049 Query 69453 TTCTAATGCTGTTATTAAAATGATTCAACATAT-AAAGAAGATGTTACCAAATAGTTTTG 69511 ||| ||| ||| | |||||| || | || |||||| | |||||| ||| ||| Sbjct 1050 TTCCGTCTATGTCATTGACATGATTAAATACATTAAAGAAAAA-TTACCAGATACTTTCT 1108 Query 69512 TTATTGCTGGTAATGTTGGTACACCTGAAGCTGTTCGTGAACTTGAAAATGCAGGCGCAG 69571 | | || || || ||| || || ||||||||||||||||| ||||| || || || | Sbjct 1109 TAACCGCGGGAAACATTGCCACGCCAGAAGCTGTTCGTGAACTAGAAAACGCTGGTGCTG 1168 Query 69572 ATGCTACAAAAGTTGGTATTGGCCCAGGTAAAGTATGTATTACTAAAATCAAAACTGGTT 69631 ||||||| ||||||||| |||| || || | ||||||||| ||| | ||||| |||| Sbjct 1169 ATGCTACCAAAGTTGGTGTTGGTCCTGGACGTGCATGTATTACCAAACTTAAAACCGGTT 1228 Query 69632 TTGGTACTGGCGGCTGGCAGTTAGCTGCATTGCGTTGGTGTTCAAAAGTAGCTACTAAAC 69691 |||||||||| ||||||||| ||||||| | | ||| ||||| || | |||| Sbjct 1229 TTGGTACTGGTGGCTGGCAGCTAGCTGCTCTTAGAATGTGCAGTAAAGTTGCCAGCAAAC 1288 Query 69692 CAATAATTGCTGATGGTGGTATTCGTACTAACGGTGATATTGCTAAATCTGTACGTTTTG 69751 || |||| |||||||| ||||| ||| |||||| ||||| || |||||||| || |||| Sbjct 1289 CACTAATCGCTGATGGCGGTATCCGTTATAACGGCGATATAGCAAAATCTGTTCGCTTTG 1348 Query 69752 GCGCTTCAATGGTTATGATTGGTTCGCTATTTGCGGGTCACGAGGAATCACCAGGTGAGA 69811 | || ||||||| ||||||||||| | | || |||||||| ||||| |||||| | Sbjct 1349 GTGCAACAATGGTCATGATTGGTTCAATGCTAGCTGGTCACGAAGAATCCCCAGGT--AA 1406 Query 69812 CGATAGaaaaa--aaTGGTAAATTATATAAAGAGTATTTTGGATCCGCTTCTGAATATCA 69869 || || || | | |||||| || || | |||| || ||||| |||||| ||| Sbjct 1407 CGTTATTAAGATTGACGGTAAAACCTACAAGCAATATTGGGGCTCCGCATCTGAAGTTCA 1466 Query 69870 AAAGGGTGAAAAGAAGAACGTTGAAGGAAAGAAGATACATGTAGAATGTAAAGGGAGT-- 69927 ||| || | | || ||||| || || |||| | |||| | || ||| | Sbjct 1467 AAAAGGAGCCTACCGCAATGTTGAGGGTAAACAGATGCTTGTACCA--TACCGGGGCTCA 1524 Query 69928 -TTGAAAGATACGTTGATTGAAATGGAACAAGATCTTCAATCTTCAATTTCTTATGCTGG 69986 ||| ||||| |||| |||||| | |||| | |||||||| || |||||||| || Sbjct 1525 ATTG-CTGATACTTTGACCGAAATGCAGGAAGACTTGCAATCTTCTATCTCTTATGCCGG 1583 Query 69987 TGGTAAA--GATTTATTAGCAATTAGAAATGTAGATTATGTCGTTGTTAAGAACTCCATT 70044 ||||||| | || || |||||| ||| |||||||| | ||||| ||| ||||| Sbjct 1584 TGGTAAAACGCTTAGTT--CAATTAAGCTTGTTGATTATGTTATCGTTAAAAACACCATT 1641 Query 70045 TTCAATGGAGATAAA 70059 | | || |||||| Sbjct 1642 ATGAGCGGTGATAAA 1656 >seq3696 Length=514 Score = 178 bits (196), Expect = 4e-39 Identities = 237/327 (72%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 188756 AAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTG-CTCAA 188814 ||||||| ||| || | |||| || ||||| || |||||||| |||| || | ||| Sbjct 326 AAAAATCAAATATTGCGCTCATTGGGCCAACTGGCTCTGGTAAAAC-TTATCTGGCACAA 268 Query 188815 ACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAA 188874 || || || || ||| |||| || | || || |||| || || | || || ||| Sbjct 267 ACTTTAGCCCGAATTTTAGATGTTCCGTTTGCCATTGCTGACGCTACCACCTTGACTGAA 208 Query 188875 GCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGAT 188934 ||||||||||| ||||||||||| |||||| | ||||| || | ||| || ||| Sbjct 207 GCTGGTTATGTCGGTGAAGATGTCGAAAACATCTTGCTGAAATTGTTGCAAAATGCAGAT 148 Query 188935 TACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCT 188994 || ||||| ||| || ||||| ||||| || |||||||||||| | ||||||||| | Sbjct 147 TATGATATTGAACGTGCTGAACGAGGAATCGTTTATATCGATGAAATTGATAAAATTTCG 88 Query 188995 AGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCT 189054 | ||||||||||| || ||||| || ||||| ||||| ||||| || |||||| | Sbjct 87 AAAAAATCAGAAAATGTCTCGATTACACGCGATGTTTCTGGTGAAGGTGTTCAGCAATCA 28 Query 189055 TTATTAAAAATCATTGAAGGTACAGTT 189081 | |||| || | ||||| || ||| Sbjct 27 CTTCTAAAGATTTTAGAAGGCACTGTT 1 >seq1955 Length=5322578 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 46593 GACGAAATACATCGTTTCAATAAAGGACAGCAAGATTCGTTATTACCTTATGTTGAAGAT 46652 || |||||||||||||| |||||| | || |||||| || ||||| |||||||| | Sbjct 3051867 GATGAAATACATCGTTTTAATAAAAGTCAACAAGATGTATTTTTACCACATGTTGAATCT 3051808 Query 46653 GGAACAATTACGTTAATTGGTGCAACAACTGAAAATCCATTTTT 46696 || | ||||| ||| ||||||||||||| |||||||| | ||| Sbjct 3051807 GGTATTATTACATTACTTGGTGCAACAACAGAAAATCCTTCTTT 3051764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591748330587008