Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq2791 113 8e-20 seq290 113 8e-20 seq878 89.7 9e-13 seq182 89.7 9e-13 seq1955 87.8 3e-12 seq7885 86.0 1e-11 >seq2791 Length=1173271 Score = 113 bits (124), Expect = 8e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 182968 AGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGG 183027 ||||| ||||| |||| | | || || | ||||| ||||||| ||||| | ||||| Sbjct 938470 AGAAAATATATATATTTTTTAAATCATTTGGAAAATTCAGAAACTCATGATGATTTATGG 938411 Query 183028 AATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAC 183087 ||||||| |||| || ||| | | | |||||| |||||| | || ||| ||||||| Sbjct 938410 AATGCATGTCAAAATCAAATGGTAACAATAGGAAAGATGCATGGATTCTTAAGAATGTAT 938351 Query 183088 TGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTT-GAGTTATAGTAT 183146 ||||| || || ||| | |||||||| |||||| ||| |||||| || | || Sbjct 938350 TGGGCAAAGAAAATATTAGAATGGACTGAAACTCCTGAAATTGCTTTAGAATGGGCCAAT 938291 Query 183147 CTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTT 183202 ||| | || ||||| || |||| ||| |||||||| || || ||||||| Sbjct 938290 -TATTTAAATAATAAATATAGTATAGATGGTTGTGATCCTAATGGTTATGTAGGTT 938236 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256 ||||||||||||||||||| || || | || ||| | ||| ||||||| ||||| Sbjct 938142 TAGGTTGTATGTGGTCTATCTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 938083 Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACAT 183316 ||||||| || ||||||||||||||||| ||| ||| |||||| || ||||| || Sbjct 938082 TTGGAAAAATTAGATATATGAATTATGAAGGTTGTAAACGAAAATTTAATATTGCTGAAT 938023 Query 183317 TT 183318 || Sbjct 938022 TT 938021 >seq290 Length=7800385 Score = 113 bits (124), Expect = 8e-20 Identities = 281/422 (67%), Gaps = 11/422 (3%) Strand=Plus/Plus Query 142809 AAAATATTGATAGGTATAACTGGCAGCGTAGCTACTGTTAAGTTACCTCATCTAATAAAA 142868 || || ||||| ||| ||||| || || || || |||| ||||| || || || | Sbjct 5182934 AAGATTTTGATTGGTTGTACTGGTAGTGTTGCAACAATTAAATTACCACAATTAGTAGAT 5182993 Query 142869 GAATTAACTCGTTTAGAAAATATAGAATTAAGAATAGTCGCTACAGAAAATGCTATGAAA 142928 ||||| ||| | || | ||| | |||||||| | || ||||| |||| | Sbjct 5182994 AAATTATGGCGTA---ATAACTTTGAAGTGAGAATAGTAGTCACTGAAAAAGCTAAACAT 5183050 Query 142929 TTT---ACAGACCAAAAAA---CTTTAGGTATTCCTATTTATACAGATAAAGATGAGTGG 142982 ||| | ||| | || || ||| |||| ||| | |||| || || ||| Sbjct 5183051 TTTTTGAAAGAGGCAGAACTGCCTCCAGGAATTCAAGTTTTATCTGATACAGTGGAATGG 5183110 Query 142983 ACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTTAG-GAGATGGGCGGA 143041 || ||||| || | | | ||||| || |||||||| || |||| || |||||| || Sbjct 5183111 GCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATATTGAT-TTAGTGAAATGGGCCGA 5183169 Query 143042 TGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATG 143101 | | ||| | || || || ||| || ||||| | | |||||||| | |||||||| Sbjct 5183170 TTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGTAAAATAGCTAGTGGTATATG 5183229 Query 143102 CGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTG 143161 |||||| || |||| | | | | | | ||||||||| | || ||| | | ||||| Sbjct 5183230 TGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCATTAAAGCCTTTGGTCTTTTG 5183289 Query 143162 TCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATGCTTT 143221 ||| || ||||||| |||||||||||||| |||| | || ||| || ||| | | Sbjct 5183290 TCCTGCCATGAATACAAAAATGTGGGAACATCCCGTTACTGCAACACAGGTATATGTTAT 5183349 Query 143222 AA 143223 || Sbjct 5183350 AA 5183351 >seq878 Length=1131996 Score = 89.7 bits (98), Expect = 9e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 81688 GTCTTCTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCT 81747 || ||| | ||||||| | |||||| ||| |||| | ||| |||||||||||||||| | Sbjct 558563 GTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTT 558504 Query 81748 TTGCTTTTATATTTTCAATCGTAT 81771 ||||||||| ||||||||| |||| Sbjct 558503 TTGCTTTTACATTTTCAATGGTAT 558480 >seq182 Length=1849075 Score = 89.7 bits (98), Expect = 9e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 82042 ACATGGTGTTTATATTTATGTAGAGCTTGTCTAGCTTTAGGTATTAATATAGTTTTATCC 82101 |||| |||||||||||||| ||| || | ||| ||||| | |||| | | | | ||| Sbjct 1367499 ACATTGTGTTTATATTTATTTAGTGCATTTCTTGCTTTTGAAATTAGAAGATTGTCATCA 1367440 Query 82102 GTTTCTAATTTGAATGATACTACAAAAGCATTTGGACACCATTCATCTACTAAATGAAAT 82161 ||||||||||| || |||||||||||||| | |||| |||| | ||| | | || | Sbjct 1367439 GTTTCTAATTTAAAAGATACTACAAAAGCCTCTGGAACCCATAAACTTACAAGAGGAGCT 1367380 Query 82162 AACATTTTAGGGAC 82175 |||| ||| || || Sbjct 1367379 AACAGTTTTGGTAC 1367366 >seq1955 Length=5322578 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/137 (74%), Gaps = 13/137 (9%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697 || ||| |||| || || ||||||||||| || ||||||| | ||||||| | Sbjct 1861284 AGTGTAGATTCTTTTTGGATATTATAATCTGA--GAGTTCTTCCATCTTCTAGCTGTTTA 1861341 Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||||| | || ||| ||| ||||| | ||| |||| |||||||||||||| ||| Sbjct 1861342 CCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCT 1861401 Query 81753 TTTATATTTTCAATCGT 81769 |||| |||||| || || Sbjct 1861402 TTTACATTTTCTATTGT 1861418 >seq7885 Length=810 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| ||||| || |||||||| || || || | || |||||||| Sbjct 321 AGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGTGTACGACCATCTTCTAATTGTTTT 380 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| ||||| |||||| | ||| | || |||||||||||||||| || | Sbjct 381 CCTGCAAAGATCAGTCTCTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTAGTC 440 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 441 TTAACATTTTCAATAGTAT 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903321468682560