Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2040 122 2e-22 seq2691 105 2e-17 seq1429 96.9 8e-15 seq1883 84.2 5e-11 >seq2040 Length=9559734 Score = 122 bits (134), Expect = 2e-22 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 ||| |||||| |||||| ||| || ||||| || | |||||||| |||||||| Sbjct 791625 TGACATTGTTGAAAGACATCTGAGGGATGATGATGTAGTATTATTCAATAGACAACCATC 791684 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA-CATTTC 305411 | | |||||| | || ||||| ||||||| ||| ||||| | || || ||||| Sbjct 791685 ATTACATAAATTAAGCATTATGGCACATAAAGCAAAAATATTAGATC-ATAGAACATTTA 791743 Query 305412 GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATA 305471 |||| |||| | ||| |||||| || |||||||| || || || || |||||||||||| Sbjct 791744 GATTTAATGAATGTGTTTGTACTCCATATAATGCTGACTTCGACGGCGATGAAATGAATT 791803 Query 305472 TGCATGTACCTCAA 305485 | ||||| |||||| Sbjct 791804 TACATGTTCCTCAA 791817 >seq2691 Length=2742322 Score = 105 bits (116), Expect = 2e-17 Identities = 122/159 (77%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| || | ||||||||| |||||||| ||||| ||| ||||| ||| Sbjct 2709248 TTCAATCGACAACCGACATTACATAAAATGAGTATGATGGGTCATAGAGTAAAAGTTTTA 2709189 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGT-GCTTGTACGCCTTATAATGCGGATTTTG 305453 | |||| | |||||||| | ||| | ||| || | | || |||||||| ||||| | Sbjct 2709188 CCATGGAGT-ACATTTCGTATGAATCTTAGTTGCACAT-CACCATATAATGCCGATTTCG 2709131 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 |||| |||||||||||| | |||| || ||||||| || Sbjct 2709130 ATGGTGATGAAATGAATTTACATGCCCCACAATCAATGG 2709092 Score = 98.7 bits (108), Expect = 2e-15 Identities = 180/255 (71%), Gaps = 14/255 (5%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| |||| | ||||||||| | |||||||| || |||| ||||| | || Sbjct 2709692 TTACAATTTCATGTAGCAACATTAGTTGATAATGATATGCCTGG---TATGCCAAGAGCT 2709636 Query 304946 ---CAAAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAAGAGGG 305001 |||| ||| || | ||||||||| | ||| | || | | | ||||| || || || Sbjct 2709635 ATGCAAAAATCAGGTAAACCTTTAAAAGCTATAAAAGCGA-GATTAAAAGGAAAGGAAGG 2709577 Query 305002 TCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCAC 305061 | | || ||||| ||| | ||||| ||||||||||||||| ||| | | ||| || || Sbjct 2709576 TAGAATACGAGGAAATTTGATGGGTAAACGTGTTGATTTTTCTGCTCGTACTGTTATTAC 2709517 Query 305062 ACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAA 305118 ||||| || ||| ||| | | || || | || || || | ||| |||||| ||| Sbjct 2709516 TCCTGA-TCCCAATTTACGGATCGATCAAGTGGGCGTGCC--TAGAAGTATTGCTCAAAA 2709460 Query 305119 ACTAACATTTCCAGA 305133 |||||||||| || Sbjct 2709459 TTTAACATTTCCTGA 2709445 >seq1429 Length=9113309 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 111054 TCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCT 111113 || ||||||||||| |||||||| ||||| | |||||||||||| ||||||||||| Sbjct 7666352 TCTCAAGTTGAAACAGGAACTCCATATATGCTTTATAAAGATCATTGCAATCGCAAATCA 7666411 Query 111114 AATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||||| ||| |||||||||| ||| ||||||||| || Sbjct 7666412 AATCATCAAAATATAGGAACAATAAAGAGTAGTAATTTATG 7666452 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 110829 GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAA 110888 |||||| | ||||| | || ||||| ||||| | ||||| | ||| | || |||||| Sbjct 7665826 GAAGAAAATAGAGCTAGAGAATTATTCTATGCTCTATGGATACCTGATCTTTTTATGAAA 7665885 Query 110889 CGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCT 110948 || ||| || ||||| || ||| || | |||||||| ||| |||||||||||| || Sbjct 7665886 CGAGTTTTGGATAATGGTATATGGACTTTAATGTGTCCACATGAATCTCCTGGTCTAGCT 7665945 Query 110949 GATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980 ||||| | || || || |||||| ||||| Sbjct 7665946 GATGTTTGGGGCAATGAATTTGAAATTCTTTA 7665977 >seq1883 Length=454209 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/171 (73%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 58835 ATATGAAGCAATACGGAGTATGAAACCATATTAAAAGGGATTCCAAGAAACATATCACCA 58894 |||| || |||| || || || | |||||||| || | |||||| |||||| || Sbjct 61625 ATATAAATTAATAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATCCGCA 61566 Query 58895 CTACGTTGATAAAATTGTAGATTAAGAGTGT-CATCTGCTTCTACATAAAATTGACATAA 58953 || | |||||||| ||| || | | | | ||| ||||| |||||||||||| || Sbjct 61565 CTTCTTTGATAAAGTTGGC-ATGATAATTCTTCAT-TGCTT--ACATAAAATTGAACAAA 61510 Query 58954 AATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACATTCCATGC 59004 | |||||||||||| | |||||||| ||||||| || ||||||||| Sbjct 61509 ACAATGACAAGGAGGTAAAGCCATTTTTGGAATATCAATTGGATTCCATGC 61459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186691972814106