Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq878 134 9e-27 seq7885 122 6e-23 seq2112 109 4e-19 seq1955 107 1e-18 >seq878 Length=1131996 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | || ||||||| || ||||||||| || || ||||| || Sbjct 558645 CCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAC 558586 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||||| | || || | ||||||||| ||||| ||||| | ||||||||| | || Sbjct 558585 AATGTGCGTCCATCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 558526 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| || || |||| || | ||| || | || || Sbjct 558525 ATTCCTTCCTTATCTTGAATTTT-TGCTTTTACATTTTCAATGGTATCTGAGGCCTCAAC 558467 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||||||||| || ||||| |||||||||||||| Sbjct 558466 CTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 558419 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||||||||||||| ||||||||||| | ||| ||||| | || | ||||||||| Sbjct 558801 TCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTA 558742 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| | || ||||| || | || || | ||| || || | || || Sbjct 558741 TCCTGAATTTT-AGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAAT 558683 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| || || | |||||| ||||| || ||||| Sbjct 558682 CGTTTTTCCAGTGAGCGTTTTGACAAAAATTTGCAT 558647 >seq7885 Length=810 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | || |||||||| || |||||||| || || ||||| || Sbjct 66 CCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 125 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || || | ||||| || ||||||||||| | |||||||||| | || Sbjct 126 AGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGA 185 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || |||||| |||| ||||| || | || || | ||| || Sbjct 186 ATACCTTCCTTATCTTGAATTTT-AGTTTTAACATTTTCAATTGTATCAGAAGCTTCAAC 244 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || || | ||||||||||| || |||||| Sbjct 245 TTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCATA 293 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || || |||||||| || || || | || || ||||||||||| ||||| Sbjct 557 TCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAG 616 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||| || || | || | |||||||||||| |||||| | || |||| Sbjct 617 ATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTT-GGCTTTTACATT 675 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||| ||| | ||| || || | || || |||||||| || | ||||| || Sbjct 676 TTCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAAC 735 Query 33738 AAAGATCTGCATA 33750 ||| || |||||| Sbjct 736 AAAAATTTGCATA 748 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| ||||| ||||| || ||||| ||||| || Sbjct 293 ACCACCACGAAGACGAAGTACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGA 352 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || || ||||||||||| ||||| |||| | ||| ||||| | || Sbjct 353 AAGTGTACGACCATCTTCTAATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGG 412 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || |||||| || | ||||| || | || ||| | ||| | Sbjct 413 AATACCTTCCTTATCTTGAATTTT-AGTCTTAACATTTTCAATAGTATCGGAAGCTTCAA 471 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | ||||| || || || |||||| Sbjct 472 CCTCCAGAGTGATGGTTTT-CCCGTAAGAGTTTTAACGAAAATTTGCATA 520 >seq2112 Length=2858 Score = 109 bits (120), Expect = 4e-19 Identities = 171/241 (71%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 33511 ATAAAATCGTC-ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTAT 33569 || ||||| || |||||||| | ||| | || | || ||||| |||||||| || Sbjct 404 ATGAAATCATCGACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAAT 345 Query 33570 GTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTG 33629 || |||||||| ||||| ||| | || || ||||||||||| ||||| ||||| | ||| Sbjct 344 ATTATAATCGGAAAGTGTACGTCCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTG 285 Query 33630 CTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGT 33688 || || | || | |||||| ||||| |||||| || || |||| || | || | Sbjct 284 TTGGTCAGGTGGAATACCTTCCTTGTCTTGAATTTT-TGCTTTTACATTTTCAATTGTAT 226 Query 33689 CGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748 || | ||| || |||| || || |||||||| || | || || || || || |||| Sbjct 225 CGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACGAAAATTTGCA 166 Query 33749 T 33749 | Sbjct 165 T 165 Score = 89.7 bits (98), Expect = 3e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || || |||||||| || || || | || |||||||||||||| |||||| Sbjct 127 TCTTTTTGAATATTATAATCGGAAAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAA 68 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||||| | || ||||| | || | |||||||||||| |||||| Sbjct 67 ATCAATCTTTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTT 21 >seq1955 Length=5322578 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || |||| ||| ||||| ||||||||| || |||||||| || || || | | | Sbjct 1861041 CGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTTCTTCCA 1861100 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | ||||| || |||||||||||||| |||||||| | || | |||||||| Sbjct 1861101 TCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCTTCTTTA 1861160 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||| || | || |||| || | ||||| | ||| || |||| ||||| Sbjct 1861161 TCTTGAATCTT-AGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTGAT 1861219 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || | ||||| |||||||| ||||| Sbjct 1861220 AGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || | ||| ||||| |||||| || || || ||||| |||||||| | | || Sbjct 1861726 AATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTACCATCT 1861785 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || |||||||||||||| || |||||| | || | |||||||| || Sbjct 1861786 TCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCT 1861845 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || | | |||| || | ||||| | ||| || || | ||||| || Sbjct 1861846 TGAATCTT-AGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATGGT 1861904 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| |||||||| || || |||||||||||||| Sbjct 1861905 TTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1861937 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || | ||| ||||| |||||| || || || ||||| |||||||| | | || Sbjct 1864366 AATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTACCATCT 1864425 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || |||||||||||||| || |||||| | || | |||||||| || Sbjct 1864426 TCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTATCT 1864485 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || | | |||| || | ||||| | ||| || || | ||||| || Sbjct 1864486 TGAATCTT-AGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATGGT 1864544 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| |||||||| || || |||||||||||||| Sbjct 1864545 TTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1864577 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| || || |||||||| || |||||||| | ||||| | | | || Sbjct 1860589 AATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAAAGTGTTCTTCCATCT 1860648 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || ||||||||||| || |||||||| | || | |||||||| || Sbjct 1860649 TCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCT 1860708 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || | || |||| || | || || | ||| || |||| || || || Sbjct 1860709 TGAATCTT-AGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAATAGT 1860767 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | ||||| |||||||||||||| Sbjct 1860768 CTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| || || || ||||| || || ||||| ||||| || | | | || Sbjct 1861498 AATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGTTCTTCCATCT 1861557 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || |||||||| || ||||| |||||||| ||||| || | || | ||||||||||| Sbjct 1861558 TCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGAATTCCTTCTTTGTCT 1861617 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || | | |||| || | ||||| | ||| || |||| ||||| || Sbjct 1861618 TGAATCTT-AGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGTGATAGT 1861676 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | ||||| |||||||| ||||| Sbjct 1861677 TTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328672167688320