Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1955 145 2e-29 seq2112 116 9e-21 seq3153 111 4e-19 seq878 95.1 3e-14 seq182 89.7 1e-12 >seq1955 Length=5322578 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| ||||| |||||||| |||||| | ||||| ||| ||| ||| Sbjct 1861252 CAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTCAGAC 1861193 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| ||||| ||||||||||| |||||||||||| || || ||| Sbjct 1861192 ACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCAGCAA 1861133 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || || || ||| | ||||||||||| ||| | | |||||||| | Sbjct 1861132 CGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAATATT 1861073 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||||||||||||||| || || ||| ||||||| Sbjct 1861072 CAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCG 1861035 Score = 136 bits (150), Expect = 9e-27 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| ||||| || ||||| || ||||| ||||| ||| ||| ||| Sbjct 1861478 CAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCGGAC 1861419 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| ||||| ||||||||||| |||||||||||| || || ||| Sbjct 1861418 ACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAGCAA 1861359 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || || ||| | ||||||||||| ||| | | ||||| || || Sbjct 1861358 CGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCT--CAGATTATAATATC 1861301 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| ||||| || || | || |||||||||||| Sbjct 1861300 CAAAAAGAATCTACACTCCATTTAGTGTTGAGACTTCGA 1861262 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| || || |||||||| ||||| | ||||| ||| ||| ||| Sbjct 1861706 CAAATCTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTCAGAC 1861647 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| |||||| ||||||||||| |||||||||||| || ||| ||| Sbjct 1861646 ACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCAGCAA 1861587 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || || ||||||||||| ||| | | ||||| || || Sbjct 1861586 CGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTATAATATC 1861527 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || || ||||| || || | || |||||||||||| Sbjct 1861526 CAAAAGGAATCTACACTCCATTTAGTATTGAGACTTCGA 1861488 Score = 131 bits (144), Expect = 4e-25 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || | ||||||||||| ||||| || ||||| ||| Sbjct 1861940 AAAATG---CAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAA 1861884 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||| |||||| | || |||||| ||||||||||| |||||||||||| || Sbjct 1861883 GCTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCA 1861824 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||| | | || || || || || || | |||||||| || || | | ||| Sbjct 1861823 GATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGAT 1861764 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || | |||||||||||||||||||| || || |||||||||||| Sbjct 1861763 TATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGA 1861716 Score = 131 bits (144), Expect = 4e-25 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || | ||||||||||| ||||| || ||||| ||| Sbjct 1864580 AAAATG---CAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAA 1864524 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||| |||||| | || |||||| ||||||||||| |||||||||||| || Sbjct 1864523 GCTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCA 1864464 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||| | | || || || || || || | |||||||| || || | | ||| Sbjct 1864463 GATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGAT 1864404 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || | |||||||||||||||||||| || || |||||||||||| Sbjct 1864403 TATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGA 1864356 Score = 125 bits (138), Expect = 2e-23 Identities = 160/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || ||||| || || || | ||||| ||| ||| || Sbjct 1861024 CAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCGGAT 1860965 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || |||||| ||||||||||| || ||||||||| ||| ||| ||| Sbjct 1860964 ACAATAGAGAATGTAAAGGCTAAGATTCAAGATAA-GAAGGAATTCCGCCTGACCAACAA 1860906 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || || || ||| | ||||||||||| ||| | | ||||| || | Sbjct 1860905 CGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTCTCAGATTATAATATT 1860846 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||||||||||||||| || || ||| |||||||| Sbjct 1860845 CAGAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGA 1860807 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || ||||| || || || | ||||| ||| ||| || Sbjct 1860797 CAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCGGAT 1860738 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || ||||| ||||||||||| |||||||||||| || || ||| Sbjct 1860737 ACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAGCAA 1860678 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || || || || | ||||||||||| || | |||||||| || Sbjct 1860677 CGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTTTAGATTACAATATC 1860618 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| || || | || ||||||||||| Sbjct 1860617 CAAAAAGAATCTACACTGCATTTGGTATTGAGACTTCG 1860580 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||| ||| || || |||||||||||||||||||| | |||||| || | | ||| Sbjct 1860807 TCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGAGT 1860866 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| ||||| || || || || || | |||||||| Sbjct 1860867 TCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTG 1860911 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||||||| || || |||||||||||||||||||| | |||||| || | | || Sbjct 1861716 TCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGT 1861775 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||| || || || || || || || | ||||||||| Sbjct 1861776 TCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGA 1861821 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||||||| || || |||||||||||||||||||| | |||||| || | | || Sbjct 1864356 TCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGT 1864415 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||| || || || || || || || | ||||||||| Sbjct 1864416 TCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGA 1864461 >seq2112 Length=2858 Score = 116 bits (128), Expect = 9e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || ||||| || ||| | ||||| ||| ||| || ||| | ||| Sbjct 179 CAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCCGATACAATTGAAAA 238 Query 206244 AGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 ||||| |||||| |||||||| || ||||| ||| || ||| || ||| | |||| Sbjct 239 TGTAAAAGCAAAA-ATTCAAGACAAGGAAGGTATTCCACCTGACCAACAGAGATTGATCT 297 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || ||||| || || ||||||||| | || | ||||||| || | || ||||| | Sbjct 298 TTGCTGGAAAACAATTAGAAGATGGACGTACACTTTCCGATTATAATATTCAAAAAGAAT 357 Query 206363 CTACTCTTCACCTTGT 206378 | |||||||||||||| Sbjct 358 CGACTCTTCACCTTGT 373 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| |||||||| |||||||| ||| || || |||||| | || || || Sbjct 15 AAAGCCAAA-ATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGC 73 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||||| || ||||||||||| | ||| | ||||||| || | || ||||| ||||| Sbjct 74 TGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTCAAAAAGAATCTAC 133 Query 206367 TCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||| ||||||| Sbjct 134 ACTTCATCTTGTTTTGCGACTTCG 157 >seq3153 Length=1268 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || |||||||| |||||| | ||||| ||| ||| || Sbjct 972 CAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCAGAT 1031 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| || || ||||| |||||||||||| || || ||| Sbjct 1032 ACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAACAA 1091 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || || || | ||||||||||| || | | |||||||| || Sbjct 1092 CGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAATATC 1151 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| ||||| || || | || || ||||||||| Sbjct 1152 CAAAAAGAATCTACACTCCATTTAGTATTAAGACTTCGA 1190 >seq878 Length=1131996 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||||||||| ||||||||||| ||||| ||||| ||| ||| || || | Sbjct 558655 TTTTGTCAAAACGCTCACTGGAAAAACGATTACTTTAGAAGTTGAAGCTTCAGATACTAT 558714 Query 206238 CGAATCAG-TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| | |||||| ||| ||||| || |||||||| ||| || || || ||| Sbjct 558715 TGAAAATGTTAAAGCTAAA-ATTCAGGATAAAGAAGGTATTCCTCCCGATCAACAGAGAT 558773 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGG 206327 | || || || ||||| || ||||||||||| Sbjct 558774 TGATTTTTGCTGGAAAACAATTGGAAGATGG 558804 >seq182 Length=1849075 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | || || ||||| |||||| | ||||| ||| || || Sbjct 123027 CAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCATCAGAT 122968 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| ||| ||||| || ||||||||||| || || || Sbjct 122967 ACTATAGAAAATGTGAAAGCTAAA-ATTCAGGATAAAGAAGGAATACCACCTGATCAACA 122909 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || |||||||| || ||||||||| | |||||| | || || || | Sbjct 122908 ACGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTGTCGGACTATAATAT 122849 Query 206352 CCAGAAAG 206359 || |||| Sbjct 122848 TCAAAAAG 122841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181700481040266