Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7885 111 1e-19 seq182 104 2e-17 seq878 102 8e-17 seq3153 84.2 2e-11 seq2112 84.2 2e-11 seq1955 82.4 7e-11 >seq7885 Length=810 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| || ||||||| |||| ||||||||||| || || || | ||||| Sbjct 74 CAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACG 133 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||||||||||||||| | | | || | | ||| |||||||| || || ||||| Sbjct 134 ACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGAATACCTTC 193 Query 132025 TTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 ||||| | | |||| |||| ||| | ||| | ||||| | | || ||||| | | Sbjct 194 CTTATC-TTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAG 252 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | ||||| ||||| |||||||||| || || ||||| Sbjct 253 TAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||| ||||||||||| || || ||| | ||||| |||||| Sbjct 538 AACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTC 597 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| || | | |||| | | |||||| || ||||| || |||||||| || Sbjct 598 TAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTG 657 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | ||||||| | || ||||| | || | ||||| Sbjct 658 AATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTT 717 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || |||||||| | ||||| ||||| Sbjct 718 ACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 >seq182 Length=1849075 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||||||||| || ||||| || ||||| |||||| | || || || | | | | Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | ||||| |||||||| || ||||| ||||||||||| |||||| ||||| | || Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 122960 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | |||||| | | || ||||| | || | |||||||| |||| |||||| | | Sbjct 122961 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 123020 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 123021 ATATCTGCAT 123030 >seq878 Length=1131996 Score = 102 bits (112), Expect = 8e-17 Identities = 159/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| || ||||||| |||||||||||||||| || || || || || || Sbjct 558637 CAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGACAATGTGCG 558578 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| || ||||| || | | |||| | | || |||||||| || || ||||| Sbjct 558577 TCCATCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTC 558518 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| ||||||| ||| | | ||| | ||||| | | ||| || || | || Sbjct 558517 CTTATCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGT 558458 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTAT 132130 | |||||||| |||| ||||| | || |||||||||| |||| Sbjct 558457 TATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGA-TTAT 558413 >seq3153 Length=1268 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 || || ||||| | | || |||||||| || ||||| || | || | |||| Sbjct 1180 AATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGTTCTTCCATCT 1121 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || || |||||||| | | |||| | || ||||||||||| || || ||||||||||| Sbjct 1120 TCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCCTTCTTTATCT 1061 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||||| || | | || | |||||| | | || ||||| | || | ||| Sbjct 1060 TGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTGATGGTT 1001 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || ||||| || ||||| | ||||||||||||| Sbjct 1000 TTTCCAGTTAGGGTTTTAACAAAAATCTGCATGA 967 >seq2112 Length=2858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || || ||| | ||||| |||||| | ||||| || | | Sbjct 358 GATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCTTCTAATTGTTTTCCAGCA 299 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | |||||| || || || || ||||| || || ||||||| ||| | Sbjct 298 AAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATTTTTGCTTTTACA 239 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||||| | || ||||| | || | |||||||| || ||||| || Sbjct 238 TTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTG 179 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 178 ACGAAAATTTGCAT 165 >seq1955 Length=5322578 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| | | |||||||||||||| ||||| || | || | | Sbjct 1861041 CGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTTCTTCCA 1861100 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | | || | ||| || ||||| || || || ||||||||| Sbjct 1861101 TCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCTTCTTTA 1861160 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | ||| | || || | | || ||||| | || | Sbjct 1861161 TCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTGATA 1861220 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||||||| | || || ||||| Sbjct 1861221 GTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476563860592560