Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3153 145 7e-30 seq7885 125 6e-24 seq1955 122 8e-23 seq878 116 3e-21 seq182 86.0 6e-12 seq2112 82.4 7e-11 >seq3153 Length=1268 Score = 145 bits (160), Expect = 7e-30 Identities = 183/249 (73%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 25155 GTAGTTTTC-AATTAAACAA-CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGAT 25212 ||||||||| || | |||| |||||| | ||||| ||||| |||| |||||| | || Sbjct 947 GTAGTTTTCCAAATCTACAATCATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCAT 1006 Query 25213 CACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAA 25272 ||| | ||||| ||||| |||||||| ||| | ||||| ||||| ||||| Sbjct 1007 CACTCTTGAAGTTGAAGCTTCAGATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAA 1066 Query 25273 AGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGA 25332 ||| || || || || ||||| ||| || | || | | || |||||||| ||||||| Sbjct 1067 AGAAGGAATTCCACCAGATCAACAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGG 1126 Query 25333 TAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATT 25392 |||| || ||||||||||| ||||||||||| || | |||||||| |||||| | Sbjct 1127 AAGAACACTCTCAGATTACAATATCCAAAAAGAATCTACACTCCATTTAGTATTAAGACT 1186 Query 25393 GAGAGGAGG 25401 ||||||| Sbjct 1187 TCGAGGAGG 1195 >seq7885 Length=810 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || |||||| | || || | ||||| ||||| Sbjct 292 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 233 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| ||||| || ||||| || || |||||| Sbjct 232 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 173 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| | || ||||| |||||||||| | | | | ||||| ||| Sbjct 172 CAGAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACACTTTCGGATTATAAT 113 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||||||| || | |||||||| | | |||||||| |||| Sbjct 112 ATTCAAAAAGAATCAACACTACATTTAGTACTGCGTTTGAGAGGTGGAA 64 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | || || | ||||| ||||| | Sbjct 747 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCC 688 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| |||||| || ||||| ||||| || ||||| || Sbjct 687 GATACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAA 628 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | | || |||||| | ||||||| | | | | | |||||| ||| Sbjct 627 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTATAAT 568 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 |||||||||||||| ||| | ||| Sbjct 567 ATTCAAAAAGAATCAACCCTCCAT 544 >seq1955 Length=5322578 Score = 122 bits (134), Expect = 8e-23 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | || || | ||||| ||||| Sbjct 1861481 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCG 1861422 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | |||||| || ||| |||||||| || || || || |||||| Sbjct 1861421 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAG 1861362 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | || | | || ||||| || ||||||| |||| | |||| |||| ||| Sbjct 1861361 CAACGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCAG--ATTATAAT 1861304 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||||||||| || | ||||||||||| ||| | ||||||||| Sbjct 1861303 ATCCAAAAAGAATCTACACTCCATTTAGTGTTGAGACTTCGAGGAGGAA 1861255 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||| || || ||||| |||||| | ||||| | ||||| ||||| Sbjct 1861940 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCT 1861881 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || || ||| | ||||| || ||| |||||||| || || || || ||| Sbjct 1861880 TCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGAT 1861821 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||| | | |||| | ||||||||||| ||||||| ||||| || ||||| Sbjct 1861820 CAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 1861761 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| ||||| || || ||||| |||| || ||| | |||| |||| Sbjct 1861760 AATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGGAA 1861709 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||| || || ||||| |||||| | ||||| | ||||| ||||| Sbjct 1864580 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCT 1864521 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || || ||| | ||||| || ||| |||||||| || || || || ||| Sbjct 1864520 TCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGAT 1864461 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||| | | |||| | ||||||||||| ||||||| ||||| || ||||| Sbjct 1864460 CAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 1864401 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| ||||| || || ||||| |||| || ||| | |||| |||| Sbjct 1864400 AATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGGAA 1864349 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || ||||| | || || | ||||| ||||| Sbjct 1860800 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCG 1860741 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | |||||| || ||| |||||||| || || || || |||||| Sbjct 1860740 GATACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 1860681 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | |||| | ||||||||||| ||||||| |||| | ||||||||| Sbjct 1860680 CAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTTTAGATTACAAT 1860621 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || ||||||||||| || | ||||| || || ||| | | |||||| Sbjct 1860620 ATCCAAAAAGAATCTACACTGCATTTGGTATTGAGACTTCGGGGAGGA 1860573 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || |||||| | ||||| | ||||| ||||| Sbjct 1861255 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTCA 1861196 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | |||||| || ||| |||||||| || || || || |||||| Sbjct 1861195 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCAG 1861136 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | |||||||| || ||||||| |||| | | ||||||||| Sbjct 1861135 CAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAAT 1861076 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||||| || || ||||| | || || || | | ||||||| Sbjct 1861075 ATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGGAA 1861027 >seq878 Length=1131996 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| |||||||| || || ||| | || || | || || || ||| Sbjct 558418 CATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTC 558477 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | |||||| ||||||| ||||| || || || || || ||||| Sbjct 558478 AGATACCATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 558537 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||||||| | || | | || |||||||| ||||||| | | |||| ||||| Sbjct 558538 GCAAAGATTGATCTTTGCTGGAAAACAACTAGAAGATGGACGCACATTGTC--TGATTAT 558595 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||||||| || || | |||||||| | | |||||||| |||| Sbjct 558596 AATATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTGAGAGGTGGAA 558647 >seq182 Length=1849075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || || ||| | ||||| | ||||| ||||| Sbjct 123030 ATGCAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCATCA 122971 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| |||||| |||||||| || ||||| || ||||| Sbjct 122970 GATACTATAGAAAATGTGAAAGCTAAAATTCAGGATAAAGAAGGAATACCACCTGATCAA 122911 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| | || || ||| | ||||||| | | | | || || ||| Sbjct 122910 CAACGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTGTCGGACTATAAT 122851 Query 25355 ATTCAAAAAG 25364 |||||||||| Sbjct 122850 ATTCAAAAAG 122841 >seq2112 Length=2858 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | || || | ||||| ||||| | Sbjct 165 ATGCAAATTTTCGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 224 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| ||||||| || || || ||||| || || || || Sbjct 225 GATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGTATTCCACCTGACCAA 284 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | | || |||||| | ||||||| | | | |||||| ||| Sbjct 285 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGACGTACACTTTCCGATTATAAT 344 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 |||||||||||||| || |||| Sbjct 345 ATTCAAAAAGAATCGACTCTTCA 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445050190998720