Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1955 107 2e-18 seq3153 98.7 8e-16 seq7885 93.3 3e-14 seq2112 84.2 2e-11 seq878 82.4 6e-11 >seq1955 Length=5322578 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||||||||| | ||||| ||||| ||||| | ||| ||| | Sbjct 1860801 AATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 1860742 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || ||| || ||| || |||||||| | || |||||| Sbjct 1860741 GGATACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 1860682 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | |||| ||| ||||||||| | |||||| | ||| | |||||||| Sbjct 1860681 GCAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTTTAGATTACAA 1860622 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||||||||||||||| ||||| |||||||| | || |||||| Sbjct 1860621 TATCCAAAAAGAATCTACACTGCATTTGGTATTGAGACTTCGGGGAGGA 1860573 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | ||| ||| || ||| | | || | ||| || |||||||||||| Sbjct 1861616 GACAAAGAAGGAATTCCCCCTGACCAGCAACGTTTGATCTTTGCTGGTAAACAATTAGAA 1861557 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| | ||||| || || ||||| ||||||||||| |||||||||||| Sbjct 1861556 GATGGAAGAACTCTCTCAGATTATAATATCCAAAAGGAATCTACACTCCATTTAGTATTG 1861497 Query 106473 AGGTTACGAGGAGG 106486 || | |||||||| Sbjct 1861496 AGACTTCGAGGAGG 1861483 >seq3153 Length=1268 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||||||||| | ||||| || ||||| || | ||| ||| | Sbjct 969 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 1028 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || || ||||| || |||||||| | || |||||| Sbjct 1029 GATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 1088 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| || |||||| | |||||| | ||| | |||||||| Sbjct 1089 CAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAAT 1148 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||||||||| ||||||||||| || | |||||||| Sbjct 1149 ATCCAAAAAGAATCTACACTCCATTTAGTATTAAGACTTCGAGGAGG 1195 >seq7885 Length=810 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||||||||| | || || || || ||||| ||||| ||| | | Sbjct 747 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCC 688 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| ||||||||||| | || || ||| Sbjct 687 GATACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAA 628 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || | || | ||| || ||||||||||||||| | ||| | |||||| || Sbjct 627 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTATAAT 568 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || ||||||||||| || || ||| Sbjct 567 ATTCAAAAAGAATCAACCCTCCAT 544 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| | ||||| || || ||||| | ||| ||| | Sbjct 292 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 233 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| || || ||||| | || ||||| Sbjct 232 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 173 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || || | |||| ||| || ||||| | |||||| || | ||| | || |||| | Sbjct 172 CAGAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACACTTTCGG--ATTATA 115 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 | || ||||||||||| ||||||||||||||| || | || |||| ||| Sbjct 114 ATATTCAAAAAGAATCAACACTACATTTAGTACTGCGTTTGAGAGGTGGA 65 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/212 (70%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| |||||||| | || || || ||||| || |||| ||| | | Sbjct 519 ATGCAAATTTTCGTTAAAACTCTTACGGGAAA-ACCATCACTCTGGAGGTTGAAGCTTCC 461 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || || |||||| || || ||||| | || ||||||| Sbjct 460 GATACTATTGAAAATGTTAAGACTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 401 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || || || || | ||| || ||||||||||||||| || | ||| | | ||||| | Sbjct 400 CAGAGACTGATCTTTGCAGGAAAACAATTAGAAGATGGTCGTACACTTTCG--GATTATA 343 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTA 106469 |||| || |||||||| || || ||| | ||| Sbjct 342 ACATCCAGAAAGAATCAACTCTTCATCTTGTA 311 >seq2112 Length=2858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 106344 AAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAA 106403 |||||| ||||||||||| | || |||||||||||| | |||| ||| || ||| Sbjct 21 AAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGCTGGAAAA 80 Query 106404 CAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACAT 106463 ||||| |||||| ||| | |||||| || || ||||||||||||||||| ||| Sbjct 81 CAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTCAAAAAGAATCTACACTTCAT 140 Query 106464 TTAGTATTG 106472 | || ||| Sbjct 141 CTTGTTTTG 149 >seq878 Length=1131996 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||||||||| || || || || || |||| || || Sbjct 558419 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 558478 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||||| || || ||||| | || ||||| Sbjct 558479 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAG 558538 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | || | ||| || |||||| |||||||| || || ||||| || Sbjct 558539 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGATGGACGCACATTGTCTGATTATAAT 558598 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || |||||||| || ||| ||||||||||| || | || |||| ||| Sbjct 558599 ATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTGAGAGGTGGA 558646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402290637647168