Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_026609.1 Length=74806 Score E Sequences producing significant alignments: (Bits) Value seq4744 223 2e-53 seq6414 170 9e-38 >seq4744 Length=1121 Score = 223 bits (246), Expect = 2e-53 Identities = 369/534 (69%), Gaps = 1/534 (0%) Strand=Plus/Minus Query 71348 CTTATTAACAAAGTACTGTTGGCCCTTACCAGTTACTTTAGGTGTCTTGCTAATTGTAGT 71407 ||| || ||||| || | ||||| |||||||||||||| || ||||| ||||| | | Sbjct 796 CTTGTTCACAAAATAGCGCTGGCCTTTACCAGTTACTTTTGGCGTCTTTCTAATACTTGG 737 Query 71408 CACCCCATTATTGTGGTTGACCGTGGTTTCTTTAATCTTAAAGAGACCAAGATCCATAGC 71467 | |||| | || |||| ||||||||||||| || || || | ||||||| Sbjct 736 CTTACCATCAGGATGATTGATTACTGTTTCTTTAATCTGAAT-AGTCCCATTTCCATAGA 678 Query 71468 CCGCTGGGTAGGCATGTTCCAGTCTGATCCCTTACGATTTACCAAGTACCCATTTTCACG 71527 | || || || | || | ||| ||| | || |||| ||| || ||||| ||||| Sbjct 677 CTTTTGAGTCGGAACATTGCGGTCACTGCCCCTCCGGTTTATCAAATAGCCATTATCACG 618 Query 71528 CATCCACTGAACCAGTCTGTTAGCACCAATATCTGCGCCATTTCCTCTCAAGATTTTGGC 71587 |||||||| || || || || ||||||| | | || || ||| |||| || ||||| Sbjct 617 CATCCACTTAAAAAGCCTATTTTGGCCAATATTTACACCTTTGCCTTTCAAAATCTTGGC 558 Query 71588 AAGCTCACCAACTAAGATAGTTGACTTACTTGCTGTTACAGAATCTGCAAACAGAGCCTT 71647 ||| ||||||||||||||||| | |||||||| || | ||||||||| ||||| || Sbjct 557 AAGTTCACCAACTAAGATAGTGTCATCACTTGCTGAAACTGTATCTGCAAATAGAGCTTT 498 Query 71648 AGGCTTCATCTCTTCAATTTGAATATCTTTAGCCTTGAGTTGGTCTGCAGCTTGTTGAAG 71707 ||| | || | | |||||| |||||||| | || ||||| |||||||| | ||| Sbjct 497 AGGTTCCAACCGCTTAATTTGGATATCTTTTTGTTCAAGCTGGTCAGCAGCTTGCTTAAG 438 Query 71708 CAATTCGGCAAGGGCAGTCTTGTCAGTTACAATAGCTTTNNNNNNNNCATCAGTTAAGTA 71767 || | || ||| | ||||| ||| | |||| | ||||| | ||| Sbjct 437 CAGGCCAGCTAGGCCGTCCTTGTTAGTAATAATATCCAAGGCTTTCTGGTCAGTAAGGTA 378 Query 71768 AGCGCCATGCTTTCTGATTGTAGGGAGTACTTCAGAAGTAACCCAATGCTTGAATGCTTT 71827 || ||||||| ||| || | || | ||| ||| ||||||||||| || || || Sbjct 377 CGCTCCATGCTGTCTAATAGCTGGTAATACCTCACTTGTAACCCAATGTTTAAACCTCTT 318 Query 71828 AGCTGTTGGCAACTTACTGGACAAGATTAAGCTATAGAGCCCAGACTCATTTAT 71881 ||| |||| || || || |||||||||||||| |||||||| || || Sbjct 317 AGCCTCAGGCATTTTGCTACTCATAATTAAGCTATAGAGACCAGACTCGTTAAT 264 >seq6414 Length=1478 Score = 170 bits (188), Expect = 9e-38 Identities = 242/338 (72%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 22617 CTTCTTGAAG-CTATGGAGAAGTTCGGGGATGGTCATAAATATGTATGGGGCGCAACTGG 22675 ||| || ||| || | || || | ||| || || ||||||||||||||||| || ||| Sbjct 1161 CTTATTAAAGGCTGTTGAAAAATACGGTGAAGGCCATAAATATGTATGGGGTGCTTATGG 1102 Query 22676 ACCTTCTACTTTTGATTGTTCAGGCTTGGTAATGTATGCCCTAAAGAAAGCATTTGGTAT 22735 |||| |||| |||||||||||||| || || | ||||| || || ||||| | ||| || Sbjct 1101 ACCTACTACATTTGATTGTTCAGGGTTAGTTTTATATGCTCTTAAAAAAGCTTATGGAAT 1042 Query 22736 TGATTACCCTCACTACTCTGGTTCACAATATTCAGTTTCTCAACACATTCCTAAGAGTAA 22795 || || |||| |||| | |||||| ||||||||||| |||| | Sbjct 1041 CAGCTATCCCCACTTTAGTGGTGCGCAATATGATAGGACTCAACACATTAGTAAGGCACA 982 Query 22796 GGCTAAGGCTGGTGACTTGGTATTCTGGGGTAAAGGCGGTAGCGAACACGTCGGTGTATA 22855 || || ||| ||| | |||||||||||| ||| ||| || ||||| ||||| || Sbjct 981 AGCAAAAAGTGGCGACCTAGTATTCTGGGGTTCAGGTGGTTCTGACCACGTTGGTGTGTA 922 Query 22856 CGCTGGCGGAAACAAGTTCTACTCTGCACAATCACCTTCACAAGGCATCGGCATGAACAC 22915 ||||| |||||||| | || | |||||||||||| || ||||| || ||||||||| Sbjct 921 TGCTGGAGGAAACAA-TACTTCAGTGCACAATCACCATCGCAAGGTATTCACATGAACAC 863 Query 22916 CCTGGACTCTGTTGTGGGTTATGGGGGTCCTTTATTTG 22953 |||| || || || || | || ||||| ||||| Sbjct 862 TTTGGATTCAGTCGTTGGCAAAGGTAGTCCTAAATTTG 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 239231230155302