Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1955 145 8e-30 seq7885 136 4e-27 seq2112 132 5e-26 seq878 102 8e-17 >seq1955 Length=5322578 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | |||||||| || || || || || || || |||||||| ||||| || Sbjct 1861027 TTCCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTG 1861086 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || || || ||||||||||| |||||||||||||| |||||||| || | Sbjct 1861087 AAAGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTG 1861146 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| |||||||| || ||| || || | |||||| || | ||| | Sbjct 1861147 GAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAA 1861206 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| || ||||| || || | |||||| || || ||||||||| Sbjct 1861207 CTTCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| |||| |||||| | || || || ||||| ||||| || || || || Sbjct 1861255 TTCCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTG 1861314 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | | | | || || |||||||| || ||||| ||||| || |||||||| || | Sbjct 1861315 AGA-GTTCTTCCA-TCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAG 1861372 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| |||||||| || ||| || || | |||||| || | ||| | Sbjct 1861373 GAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAA 1861432 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | |||||||||||| || || | |||||| || || |||||||| Sbjct 1861433 CTTCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 122 bits (134), Expect = 9e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| |||| |||| ||| || || || || || || || || ||||| || || || Sbjct 1861709 TTCCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 1861768 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | || || || |||||||| |||||||||||||| || ||||| || | Sbjct 1861769 AGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 1861828 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| |||||||| || || || || | |||||| || | ||| | Sbjct 1861829 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAA 1861888 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 | || | || |||||||| || |||||||| ||||| || || |||||||| Sbjct 1861889 CTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 1861940 Score = 122 bits (134), Expect = 9e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| |||| |||| ||| || || || || || || || || ||||| || || || Sbjct 1864349 TTCCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 1864408 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | || || || |||||||| |||||||||||||| || ||||| || | Sbjct 1864409 AGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 1864468 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| |||||||| || || || || | |||||| || | ||| | Sbjct 1864469 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAA 1864528 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 | || | || |||||||| || |||||||| ||||| || || |||||||| Sbjct 1864529 CTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 1864580 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || |||||| | |||| ||| || | || || || ||||| ||||| || ||||| || Sbjct 1860570 CTCTCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATC 1860629 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 || || || || || |||||||| ||||||||||| || |||||||| || Sbjct 1860630 TAAAAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGG 1860689 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || |||||||| |||||||| || ||| || || | ||| || || | ||| Sbjct 1860690 AGGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTC 1860749 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || || || || | ||||||||| || || |||||| Sbjct 1860750 AACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1860801 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||||| |||||||| || || || || || || || || ||||| || || || | Sbjct 1860800 TTCCTCCTCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 1860859 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | | | | || || ||||||||||| |||||||||||||| || || || ||| Sbjct 1860860 AGAGAGTTCTTCCA-TCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGC 1860918 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || |||||||| || || || || | ||| || || | ||| Sbjct 1860919 GGAATTCCTTC-TTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCA 1860977 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || || || || | ||||||||| || || |||||| Sbjct 1860978 ACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1861028 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||||| |||| ||| || | || || || ||||||||||| || || || || | Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || || | ||||| || ||||| |||||||| ||||| || || || Sbjct 1861543 AGAGTTCTTCCA-TCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGG 1861601 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| |||||||| || || || || | |||||| || | ||| || Sbjct 1861602 AATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAAC 1861661 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| || || | |||||| || || ||||||||| Sbjct 1861662 TTCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 1861710 >seq7885 Length=810 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||||| || || || ||||| |||||||| || || ||| || || || Sbjct 530 AGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGA 589 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| || ||||| ||||| | ||| || ||||| || || |||||| Sbjct 590 CCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCT 649 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||||||||| ||| || || | || ||||| | ||| || || |||||| Sbjct 650 TTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCCAGAGTA 709 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| || | ||||||||| ||||||||||| Sbjct 710 ATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| | |||| || | ||||| || ||||| |||||||| || || || Sbjct 64 TTCCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCG 123 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || || || ||||||||||| || ||||||||||| | ||||||||| || | Sbjct 124 AAAGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTG 183 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| ||| || || | ||| || || | ||| | Sbjct 184 GAATACCTTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAA 243 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | |||||| ||||| || || | |||||| || || |||||||| Sbjct 244 CTTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 Score = 111 bits (122), Expect = 2e-19 Identities = 153/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || ||||| || || ||||| || || || || || || || Sbjct 312 ACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGTGTACGACCATCTTCT 371 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | ||||| |||||||| |||| | ||| ||||| || || || ||||| || |||||| Sbjct 372 AATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGAATACCTTCCTTATCTTGA 431 Query 134625 ATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 | |||| || | | | | |||| || ||||| | ||| || || ||||| |||||||| Sbjct 432 A-TTTTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACCTCCAGAGTGATGGTTTT 490 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||||||||||||||||||| Sbjct 491 -CCCGTAAGAGTTTTAACGAAAATTTGCAT 519 >seq2112 Length=2858 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | || ||||| || || ||||| |||||||| || || ||| | Sbjct 391 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAA 332 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | ||||| || ||||| ||||| | ||| || || || || Sbjct 331 AGTGTACGTCCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGA 272 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||||||| ||| || || | ||| ||||| | ||| || Sbjct 271 ATACCTTCCTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACT 212 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || |||||||| |||||||| || | ||| || ||||||||||||||| Sbjct 211 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACGAAAATTTGCATT 164 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | |||||||| || || || || || ||||| |||||||| || || ||| Sbjct 165 TTCCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGG 106 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || | || || | ||||| || ||||||||||| | || ||||| || | Sbjct 105 AAAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAG 46 Query 134605 GTATGCCTTCTTTTTCTTGAATTTT 134629 | || |||||||| ||||||||||| Sbjct 45 GAATACCTTCTTTGTCTTGAATTTT 21 >seq878 Length=1131996 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| ||||| | |||| || | |||| || || || |||||||| || || || | Sbjct 558647 TTCCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAG 558588 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| | || | || || || ||||| || ||||| ||||| | |||||||| || Sbjct 558587 ACAATG-TGCGTCCATCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGT 558529 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || |||||||||||| ||| || || | || || || | || Sbjct 558528 GGAATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCA 558469 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || |||||||| || || ||||| || || || ||||| Sbjct 558468 ACCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 558419 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| || ||||||||||| | ||| |||||||| || || |||||||| || |||||| Sbjct 558792 TGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTATCCTGAATT 558733 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||| || || | || || || | ||| || || | |||||| ||||| || Sbjct 558732 TTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATCGTTTTTCCA 558673 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||||| || |||||||||||| Sbjct 558672 GTGAGCGTTTTGACAAAAATTTGCATT 558646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505348201303920