Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1429 197 2e-45 seq2024 143 4e-29 >seq1429 Length=9113309 Score = 197 bits (218), Expect = 2e-45 Identities = 230/309 (74%), Gaps = 1/309 (0%) Strand=Plus/Minus Query 68622 TTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCT 68681 ||| || || ||| || | ||||||| ||| || || || |||| ||| | | ||| Sbjct 7667342 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCT 7667283 Query 68682 CTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCT 68741 || |||||| ||| | | ||| ||||| || | |||||| || || || | ||||| Sbjct 7667282 TTCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCT 7667223 Query 68742 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGC 68801 | ||||||||||| ||||| |||||||| | ||||||||||||||| | |||||| || Sbjct 7667222 TCTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 7667163 Query 68802 AGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGAT 68861 |||||||| |||||||| ||||| | || ||| |||||||| |||| | ||| | Sbjct 7667162 TGTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATTTCTAACTCCATAT-TTAGCAA 7667104 Query 68862 TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTA 68921 ||| | ||||| | |||||||||| | || || ||| | ||||||||| | |||||| Sbjct 7667103 TTTTTTTTTTAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCGTA 7667044 Query 68922 TTGTAGAAT 68930 ||||| ||| Sbjct 7667043 TTGTAAAAT 7667035 Score = 172 bits (190), Expect = 8e-38 Identities = 227/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || ||||||||||||||||| ||||| || | |||||| | |||||||||||||| | Sbjct 7665259 TTACCAGTATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 7665200 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 ||||| || | |||| |||| |||||||||||| ||||| | |||| || || ||| Sbjct 7665199 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 7665140 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || || ||||| | ||| ||||| | |||||||||| |||| ||| |||| || Sbjct 7665139 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 7665080 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 | |||||||| |||||| | | | || || || || || || |||| || Sbjct 7665079 GTACCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTACTAATG 7665020 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA-TGTTAAG 69959 || || || | ||| ||||| || || || || || || ||||| || ||| |||||| Sbjct 7665019 AGTGCGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGTTAAT 7664960 Query 69960 AAGAAAACAGCT 69971 || |||||| || Sbjct 7664959 AA-AAAACAACT 7664949 Score = 136 bits (150), Expect = 5e-27 Identities = 132/167 (79%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 69503 GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTG 69562 ||||||| || ||| ||||||| |||||||||||| | | |||||| |||||| || Sbjct 7665982 GTGTATAAAGAATTTCAAATTCATTGCCCCAAACATCAGCTAGACCAGGAGATTCATGTG 7665923 Query 69563 GACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCC 69622 ||||||| || | ||| | | ||| |||| ||||||||||||||| ||||| || |||| Sbjct 7665922 GACACATTAAAGTCCATATACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 7665863 Query 69623 AAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | ||||| ||| || | ||||| | |||||||||||| || ||||| Sbjct 7665862 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 7665817 Score = 134 bits (148), Expect = 2e-26 Identities = 270/395 (68%), Gaps = 14/395 (4%) Strand=Plus/Minus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCA-GCTTCTGGAATAGGATAATAATTA 69174 |||| |||||||||||||| |||||| ||||| ||||||||||||||||||||||| Sbjct 7666676 TACCTATAGGTCTATGTCTAAAATTTGA-CTTTCTCGCTTCTGGAATAGGATAATAATTG 7666618 Query 69175 ATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGA 69234 | ||| |||||||| | ||||| | || | ||| || | | ||||| || Sbjct 7666617 ACATCGATAATTTTGTCGAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGA 7666558 Query 69235 AAATCAAATCGTCCATCTA-------TAACAAACATATTCAGTGCTACAGATGCTAGATT 69287 ||||||||| | || || | ||||||||||| | || | || |||| ||| Sbjct 7666557 AAATCAAATGTTTGAT-TATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATT 7666499 Query 69288 ACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACA 69347 ||| || || || |||| | | | | ||| || | | |||||||||| |||||||| Sbjct 7666498 ACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACT 7666439 Query 69348 TTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAAT 69407 || || || || | |||||| ||||| || || || || || ||||| || Sbjct 7666438 CTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGCAT 7666379 Query 69408 AAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATT 69467 | | ||||| || ||||||| ||||| | ||||| | |||| | | ||||| | Sbjct 7666378 ATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTTG 7666319 Query 69468 TATTACGGTC--TTGTAACGCTTCTCTTTTTCATA 69500 ||| ||| || || | ||||| |||||||| Sbjct 7666318 AATT--TGTCGTTTATATCTTTTCTCATTTTCATA 7666286 Score = 118 bits (130), Expect = 1e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| |||||||| | |||| | |||||| |||||||| || || ||||| ||||| || Sbjct 7666922 ATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCTAAAGCACCATA 7666863 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||| | |||||| || |||| |||| || | |||||| ||| ||| || |||||||| Sbjct 7666862 ATACAATGTTTCAAATATCTGAATATTAAGTTTTTGTGCCTCTTCACTTTCAAATGGATA 7666803 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | | || |||||||||||| | || |||| |||||||| Sbjct 7666802 ACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 7666758 Score = 109 bits (120), Expect = 8e-19 Identities = 192/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 69959 GAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATG 70018 ||| || | | ||||||||||| || || |||| | ||| ||| | ||| ||||||| Sbjct 7664893 GAAAAATATACCTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATG 7664834 Query 70019 CGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC- 70077 | || || || | ||| || | | ||| || ||||| |||||| || ||||| Sbjct 7664833 CATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTATCAATATCTT 7664774 Query 70078 CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTA 70137 ||| ||| || | | || || | ||| ||||||||||| |||| ||| || ||| Sbjct 7664773 CACC-ATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTT 7664715 Query 70138 TTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAA 70197 || |||||| || | || | |||| || ||||| || |||||||| || || | Sbjct 7664714 CCATGTATTTTTAATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTA 7664655 Query 70198 AAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTAT 70234 || ||||| || ||||| || ||||||||| |||| Sbjct 7664654 AAATCTCTATCATAAATTATTGCAGAATTTAACTTAT 7664618 >seq2024 Length=8919894 Score = 143 bits (158), Expect = 4e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 || ||||| ||||||| | ||||||||||||||| | ||||| || || | ||||| Sbjct 2396614 TACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2396673 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || ||||| | ||| || || |||||||| ||| || ||||| ||| | | ||| Sbjct 2396674 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2396733 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 ||||| || ||||||||| || ||||||||||| || ||||| ||||||| |||| Sbjct 2396734 TCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2396793 Query 40067 TCATCGGGTGTCAATTTATTCCAGTCA 40093 ||| || || || |||||||| ||| Sbjct 2396794 TCACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 109 bits (120), Expect = 8e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||||| | ||||||||| || |||||||||||||||||||| || ||| ||| Sbjct 2395963 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 2396022 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | || ||| ||||| ||||| | || ||| |||| || || |||| ||| |||| ||| Sbjct 2396023 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 2396082 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601 || | || || || | || || ||||| ||| ||| | ||| || | | Sbjct 2396083 ATTTTAACAGCATCCTTAATAATTGATGTAACTCGTTCACAAGATGGTTTTTGTACAATG 2396142 Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 ||||| |||||||| || || || |||||||||| |||| Sbjct 2396143 TGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 Score = 107 bits (118), Expect = 3e-18 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | || || |||||| ||||| ||||| ||||| | |||| Sbjct 2396287 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTT 2396346 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || || || |||||| ||| |||||| || ||||||||||| ||||| | Sbjct 2396347 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2396406 Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 |||| | | || || | | | |||| || |||||| || ||||||| || Sbjct 2396407 CAACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2396466 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||| || ||||| |||| |||| ||||||||||| Sbjct 2396467 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAA 2396506 Score = 107 bits (118), Expect = 3e-18 Identities = 99/124 (80%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 |||| || | |||||||||||| |||||||||| || || || || ||||||||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT-TTGCAAGG 40219 ||| |||||| | |||| || ||||||| |||||||||| |||||||| || ||| Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAATA 2397017 Query 40220 ATGG 40223 |||| Sbjct 2397018 ATGG 2397021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686840572783440