Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq6359 98.7 2e-15 >seq6359 Length=986 Score = 98.7 bits (108), Expect = 2e-15 Identities = 235/350 (67%), Gaps = 18/350 (5%) Strand=Plus/Plus Query 49182 TTTGTTGGACCATCTGGTACTGGTAAAACTGAAATCACAAAAGCACTTGCTGAAGCAA-- 49239 |||||||| ||| | ||| ||||||||||| | | || ||| || |||||| Sbjct 63 TTTGTTGGTCCAACGGGTGTAGGTAAAACTGAGCTTGCTAAGCAACTCGCC-AAGCAAAT 121 Query 49240 --TGGGTTCTGA----GCTA--ATTCGTTTTGATATGTCAGAGTTTTCGCAAGACCACAC 49291 | ||||| || |||| ||||||||||||||||| || | | | | || | Sbjct 122 GTTTGGTTCAGAAGACGCTATGATTCGTTTTGATATGTCGGAATATATGGAGTCATACTC 181 Query 49292 TGTATCTAAACTTATTGGTTCACCTCCTGGATATGTAGGACATGAAACAGGAAATGGTCA 49351 || || ||| | ||||| ||| | ||||| ||||| || ||||| || | ||||| Sbjct 182 AGTTTCGAAATTAATTGGATCAGCACCTGGCTATGTTGGTTATGAAGAAGCA---GGTCA 238 Query 49352 GCTTCTTGATAAAGTT--GAACAATTCCCTAATGCAGTACTTCTACTGGATGAAATTGAA 49409 || || |||| | |||| ||| || || || || | || ||||||||| Sbjct 239 ACTAACGGAACGAGTTCGGCGCAAT--CCTTATAGTTTAATTTTATTAGACGAAATTGAA 296 Query 49410 AAAGCACATCCAAAAGTACTGCTGACATTCCTACAAGTATTGGATGAAGGGCGTTTGACT 49469 ||||| |||| ||| || |||| | ||| | |||||||| || ||||| ||| Sbjct 297 AAAGCCGATCCTTCAGTGATGAACTTATTCTTGCAAATTTTGGATGATGGCCGTTTAACT 356 Query 49470 GGTTCACAAGGAAAAACAGTTTACTTTAATAATATTACTGTTATTATGAC 49519 | |||||||||| || |||| |||||| ||| | |||||||||| Sbjct 357 GATTCACAAGGACGGACGGTTTCCTTTAAAGATACCATCATTATTATGAC 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108882295278054