Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1395 168 5e-37 seq2024 141 7e-29 seq1883 132 4e-26 >seq1395 Length=2354079 Score = 168 bits (186), Expect = 5e-37 Identities = 227/315 (72%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 ||| ||||| || | || | ||| |||||| ||| || |||||| ||| ||| || Sbjct 218083 CCAGATTGGGATTTTCAAAAAATGGGAATTGGTGGACTGGATAAAGAATTTACTGCTATT 218024 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 ||||| ||||| |||| || || |||||| | |||| | ||| |||||| || ||| Sbjct 218023 TTTCGAAGAGCCTTTGCATCACGAGTTTTTCCGCCAGAGATTGTTACACAATTAGGTTGT 217964 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||| |||| |||||||| ||||| || |||||||||||||| || Sbjct 217963 AAACATGTGAAAGGAATTTTACTTTATGGTCCACCAGGAACAGGAAAAACATTAATGGCT 217904 Query 19396 AGAGAACT---TAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 ||| || | | || ||| | | | | ||||| ||||| || ||||| ||| || Sbjct 217903 AGACAAATAGGAACTATGTTAAATGCTAGAGAACCT---AAAATCGTTAATGGCCCTCAA 217847 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 ||||| ||||||||||||| || |||| ||| | || | || |||||||| ||| Sbjct 217846 ATCTTGGATAAATATGTAGGAGAAAGTGAAGCCAATATTAGAAGATTATTTGCTGATGCT 217787 Query 19513 GAAGAAGAACAAAAA 19527 ||||||||| | ||| Sbjct 217786 GAAGAAGAAGAGAAA 217772 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT--TCTGG-T 19605 || || || || || | |||||| | || || || |||||| ||||| | ||| | Sbjct 217682 TTACATATAATTATTTTTGATGAAATTGATGCTATTTGTAAGTCTCGAGGTAGTGTGGCT 217623 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| ||||| ||||| |||||||| |||||| | || ||||| | || ||||| Sbjct 217622 GGTAATACAGGAGTTCATGATACTGTTGTGAATCAATTACTTGCAAAAATTGATGGTGTA 217563 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | ||| | ||||||||| | |||||||| ||||||||| || || | ||||| Sbjct 217562 GAACAATTAAATAATATTCTTGTTATTGGTATGACTAATCGAAGAGATATGATAGATGAA 217503 Query 19723 GCCTTATTACGACCCGGTCGGTTGGA 19748 || ||||||||||| ||| | || || Sbjct 217502 GCTTTATTACGACCTGGTAGATTAGA 217477 >seq2024 Length=8919894 Score = 141 bits (156), Expect = 7e-29 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||||||||||||||||| || || || |||||||| || || || || |||||| Sbjct 2396795 GAAAAACATTTTATATCTCATGTCTTAGCATTTTTTGCAGCATCTGATGGAATTGTCAAT 2396736 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| | ||| || ||| |||||||| ||| || |||| ||||| ||||| ||| Sbjct 2396735 GAGAATCTTGTTGAACGATTTAGTCAAGAAGTACAAATAACAGAGGCACGTTGTTTCTAT 2396676 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || |||||| ||||||| |||||| ||||||| |||||||| | | | || |||||| Sbjct 2396675 GGTTTTCAAGTTGCCATGGAAAATGTTCATTCAGAAATGTATTCTTTGTTAATTGATACG 2396616 Query 44009 TACATCAAAGATG 44021 ||||| ||||| Sbjct 2396615 TACATTGCAGATG 2396603 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| ||| ||||| || ||||| ||||||| | ||| || ||||||||||| Sbjct 2397010 AGAAAATCCACGTAGATTTGTTGTTTTTCCTATTCAATGGCCTGATATTTGGCAAATGTA 2396951 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 ||||||||| | || || |||||||||| |||||||| ||| | |||||| Sbjct 2396950 CAAAAAAGCTGAAGCATCTTTTTGGACAGTGGAAGAAGTAGATCTTTCTAAAG 2396898 Score = 82.4 bits (90), Expect = 6e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTG-AA 44551 |||| ||||||||||| |||||| ||||||| || ||||| || |||||||| |||| || Sbjct 2395845 AAAATCCGTTTGATTTCATGGAACATATTTCTTTAGAAGGTAAGACAAACTTCTTTGAAA 2395786 Query 44552 AAACGCGTTGGAGAATATCA 44571 ||| || ||||||||||| Sbjct 2395785 AAAAAAGTGGGAGAATATCA 2395766 >seq1883 Length=454209 Score = 132 bits (146), Expect = 4e-26 Identities = 186/254 (73%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || ||||||||||| | ||||||||||| | | |||||| | |||||| Sbjct 61047 TTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAAGAATTATTATGG 61106 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGA-GTGCACATTTGGAA 40810 || || || || | || |||||||| |||||| |||| |||| || || |||||| | Sbjct 61107 TTCATTAATGGATCCACAAATGCTAAAAAATTAAGCGAAA-AGGATGTTCATATTTGGGA 61165 Query 40811 TGCGCACAGTTCTAAA-ACATATTTG--TCTAGCATAGGATTACAAGATAGGGATGAAGG 40867 |||| | ||||| | | || | ||| | | | ||||| |||||||| ||||| Sbjct 61166 TGCGAATAGTTCACGTGAGTTCTTAGATTCTTG--TGGTTTTACA-GATAGGGAAGAAGG 61222 Query 40868 TGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTAT 40927 ||| | |||||| ||||||||||||| | | |||||||||| |||| |||| | ||| Sbjct 61223 AGATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCAACATATAAAGATAT 61282 Query 40928 GTACTCTGATTATA 40941 |||| ||||||| Sbjct 61283 GTACAAAGATTATA 61296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397417509615730