Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1955 143 2e-29 seq7885 127 2e-24 seq182 118 9e-22 seq878 104 2e-17 seq3153 102 7e-17 seq1429 87.8 2e-12 >seq1955 Length=5322578 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||||||||| ||| | ||||| ||||||||||||||||| || Sbjct 1861029 CCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAA 1861088 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| |||||||| || || |||| | ||| || ||||| || || Sbjct 1861089 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGA 1861148 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||| ||| | |||||| ||||||| ||||||||| Sbjct 1861149 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861208 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| ||| || || |||||||| |||||||||||||| Sbjct 1861209 TCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Score = 122 bits (134), Expect = 7e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | | ||| || ||||| | ||||| |||||||| ||||| || || Sbjct 1861257 CCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTGAG 1861316 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||| | | ||||| ||||||||||| || | || | || || ||||| || || Sbjct 1861317 A-GTTCTTC-CATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 1861374 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||| ||| | |||||| ||||| | ||||||||| Sbjct 1861375 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAACT 1861434 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 |||| ||| || | |||||| || |||||||| ||||||||||||||| || || Sbjct 1861435 TCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCATACCTCCT 1861488 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | | |||||||||||| | ||||| |||||||| |||||||| || Sbjct 1860574 CCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAA 1860633 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | | ||||| || ||||| || || |||| | || || ||||| || || Sbjct 1860634 AGTGTTCTTC-CATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 1860692 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| ||||| ||| | | |||| || || | |||||||| Sbjct 1860693 AATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAAC 1860752 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||| || || || |||||||| |||||||| ||||| Sbjct 1860753 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||||||||| ||| | ||||| ||||| |||||||| || || Sbjct 1860802 CCTCCTCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1860861 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| |||||||| || || |||| | ||| ||||| || ||||| Sbjct 1860862 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGGA 1860921 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||| ||| ||||| || | | |||| || || | ||||||||| Sbjct 1860922 ATTCCTTCTT-ATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAACT 1860980 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| || || || |||||||| |||||||| ||||| Sbjct 1860981 TCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1861027 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | | |||||| ||||| | ||||| || ||||| ||||| || || Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| | |||||||| || | || | ||| || || || || || Sbjct 1861543 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGA 1861602 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||| || | |||||| ||||||| ||||||||| Sbjct 1861603 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861662 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| ||| || || |||||||| |||||||||||||| Sbjct 1861663 TCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGT 27093 |||||| | ||| | ||||| ||||| |||||||| || || | |||| | | | Sbjct 1861725 CAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTAC-CAT 1861783 Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153 |||| || ||||| || || |||| | ||| |||||||| || || | || ||||||| Sbjct 1861784 CTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTAT 1861843 Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | ||||| || | | |||| ||||||| ||||||||||||| || || | Sbjct 1861844 CTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATGG 1861903 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || | ||| || |||||||| ||||| Sbjct 1861904 TTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1861937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGT 27093 |||||| | ||| | ||||| ||||| |||||||| || || | |||| | | | Sbjct 1864365 CAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTAC-CAT 1864423 Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153 |||| || ||||| || || |||| | ||| |||||||| || || | || ||||||| Sbjct 1864424 CTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTAT 1864483 Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | ||||| || | | |||| ||||||| ||||||||||||| || || | Sbjct 1864484 CTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATGG 1864543 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || | ||| || |||||||| ||||| Sbjct 1864544 TTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1864577 >seq7885 Length=810 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| |||| ||| ||||||| || || |||||||||||||| || || | Sbjct 66 CCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATC-CGA 124 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | || | ||||||||||||||||| || |||| | | ||| ||||| || || Sbjct 125 AAGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGG 184 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| || || |||| | |||| | || || | |||||||| Sbjct 185 AATACCTTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAAC 244 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| ||| || | ||| || || |||||||| ||||| ||||||||| Sbjct 245 TTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCATA 293 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||||||||| || ||| | | || | ||||| | ||||| || Sbjct 551 GTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCA 610 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | |||||| || || || | ||| ||||| || || ||| ||| Sbjct 611 GCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTT 670 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | || || | ||||||||||| ||||| |||| ||| ||||| |||||| Sbjct 671 ACATTTTCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTTACCCGTAAGAGTT 730 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||| ||||||||| Sbjct 731 TTAACAAAAATTTGCATA 748 >seq182 Length=1849075 Score = 118 bits (130), Expect = 9e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 ||||||||||||| ||||| || | || | ||||| | || || || || ||| Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | ||||| |||||||| || || | || |||||||| || || ||||| ||| Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 122960 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 ||| ||| |||| ||||| ||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 122961 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 123020 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 123021 ATATCTGCAT 123030 >seq878 Length=1131996 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| |||| ||| |||||||| || || |||||||||||||| || || | Sbjct 558645 CCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAC 558586 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| || ||||| || || | || | | || ||||| || || Sbjct 558585 AATGTGCGTCCATCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 558526 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| || || ||| | |||| | || |||| ||| ||||| Sbjct 558525 ATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACC 558466 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| | ||| || |||| ||||| |||||||| ||||| Sbjct 558465 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 558419 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| || || |||| | | ||||||||| || || | ||| |||||| Sbjct 558801 TCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTA 558742 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||| | |||| | ||| |||| ||||||||||||| ||| || Sbjct 558741 TCCTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATC 558682 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || || ||||| ||||| |||||||| Sbjct 558681 GTTTTTCCAGTGAGCGTTTTGACAAAAATTTGCAT 558647 >seq3153 Length=1268 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTC 27094 ||||| ||||| | ||||| |||||||| |||||||| || | |||| | | || Sbjct 1180 AATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGTTCTTC-CATC 1122 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| || |||||||| || | || | || |||||||| || || | || |||||||| Sbjct 1121 TTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCCTTCTTTATC 1062 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||| || || | | |||| ||| |||| ||||||||||| ||||| || | Sbjct 1061 TTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTGATGGT 1002 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || ||||| ||||| || ||||| Sbjct 1001 TTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 >seq1429 Length=9113309 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 130745 AAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTC 130804 |||||| ||| | | |||||| || || | ||| || | ||| |||||| ||||| Sbjct 7667263 AAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTTCTTGTGTAAATATTGCTG 7667204 Query 130805 GTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATG 130864 ||| | ||||| | ||||| || || || || ||||||||||| | ||| || ||||| Sbjct 7667203 GTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCTGTTGATGCTGTTGGCATC 7667144 Query 130865 TATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCC 130924 ||| | ||| | |||||| | || || | | | |||||| || || | | | Sbjct 7667143 GGTGCAATTAACAAAGAATTTCTAACTCCATATTTAGCAATTTTTTTTTTAAAAT-AGTC 7667085 Query 130925 CAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTA 130973 |||||||||| | || || | ||| ||||||||||| |||||| Sbjct 7667084 CAATCCCATAAATTAGTTGGAATAACA---TTCCACATATCGTATTGTA 7667039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424893248555952