Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5476 114 2e-20 >seq5476 Length=1777 Score = 114 bits (126), Expect = 2e-20 Identities = 297/444 (67%), Gaps = 34/444 (8%) Strand=Plus/Minus Query 9464 GCGTGAACACCCAAGATCTTCTCGCGTCCCCGAACACTTGGGAG-AGCTACTTGGATCTT 9522 |||||||| | || || || ||||| |||||| | |||| | | || || || Sbjct 550 GCGTGAACCCGTAAAATAGCTTCACGTCCGCGAACA-TCCGGAGTACCAACCAAGACTTT 492 Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 || ||||| ||||| |||||||| | || ||| | | ||| || || || || Sbjct 491 CCGGTCAAAACGACCAGGACGAAGCAAAGCTGGATCCAATACATCGGACCGGTTAGTTGC 432 Query 9583 GGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA-----A 9634 ||| || |||| || |||| ||||| || ||||||||||| | |||| | Sbjct 431 GGCAATAACAATAACACCT---TCATTGCCCTCGAAACCATCCAT---TTTCAACTAACA 378 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--------CGCTGGCA-TACCACCAGCA 9685 | |||||| | || ||||| |||||||| || |||||||| | | |||| | Sbjct 377 ACTTGGTTTAAGGTCTGTTCACGTTCATCGTTACCACCACCGCTGGCATTGCTACCACGA 318 Query 9686 CTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCG 9745 | || || | |||||||| ||||| || |||| || | |||| ||||| Sbjct 317 CGACG------ACCGATTGCATCAATTTCATCGATAAAGATAATACTTGGTGCATTTTTC 264 Query 9746 CGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACA 9805 ||| | | || | ||| |||||||| |||| || ||||| |||||||| || ||| Sbjct 263 TTAGC-ATTGGTAATAAATCACGTACACGACTGGCACCAACACCGACAAACATTTCTACA 205 Query 9806 AAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGC 9864 |||| || | ||| |||| || || || ||||| | |||||| |||| || || || Sbjct 204 AAGTCTGAACCAGAA-ATTGAGAAAAATGGTACATTGGCTTCACCAGCAACTGCCCGCGC 146 Query 9865 GAGAAGAGTCTTACCCGTACCTGG 9888 || | |||||||| ||||| || Sbjct 145 AAGTAAGGTCTTACCAGTACCCGG 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583202867621040