Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq1883 114 1e-20 >seq1883 Length=454209 Score = 114 bits (126), Expect = 1e-20 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 112063 TATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCT 112122 |||||||| ||| | ||||||||||| |||||||||||||| || | |||||| | Sbjct 61273 TATGTTGCACCAAAATGTCTCCATTGAAATCCATAAATAGGACCTAAATCTCCTTCTTCC 61214 Query 112123 GTATCTGGAAATTGCTCTCTATTC-AACAAATCACTTCTAATATGAGGATTCCAAATCTT 112181 |||||| ||| | | | || || || |||| | | ||| | || |||||| | Sbjct 61213 CTATCTGTAAAAC-CACAAGAATCTAAGAACTCACGTGAACTATTCGCATCCCAAATATG 61155 Query 112182 CAC-TCCTTTA-GATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAAT 112239 || |||||| | | ||| | | | |||||||||||||| |||| ||||||| ||| Sbjct 61154 AACATCCTTTTCGCT--TAATTTTTTAGCATTTGTGGATCCATTAATGAACCATAATAAT 61097 Query 112240 TCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 |||||||| || |||||||| | || | ||| ||||||| | |||||| Sbjct 61096 TCTTCCACTACACCTTTCCAAAATACGCGTTTTGTAGTTAATAATGGAAA 61047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391907643253198