Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq290 165 1e-35 seq1429 86.0 8e-12 >seq290 Length=7800385 Score = 165 bits (182), Expect = 1e-35 Identities = 285/408 (70%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 89005 AAAATATTAATAGGTGTCACTGGCAGTGTTGCTACTATTAAATTACCGGAGTTGCTAGAT 89064 || || || || ||| ||||| |||||||| || ||||||||||| | || ||||| Sbjct 5182934 AAGATTTTGATTGGTTGTACTGGTAGTGTTGCAACAATTAAATTACCACAATTAGTAGAT 5182993 Query 89065 AAATTATTAGGACTAGGTAATATTGAAATACGTATAGTAGCCACGAAAAACGCTACTCAT 89124 ||||||| || || ||| ||||| | | ||||||| ||| |||| |||| ||| Sbjct 5182994 AAATTAT--GGCGTAA-TAACTTTGAAGTGAGAATAGTAGTCACTGAAAAAGCTAAACAT 5183050 Query 89125 TTCT---ATGATCAAAAAATAT----AATAATGCCTATTTACACCGATTCAGACGAATGG 89177 || | | || | || | | ||| | ||| | ||| ||| |||||| Sbjct 5183051 TTTTTGAAAGAGGCAGAACTGCCTCCAGGAATTCAAGTTTTATCTGATACAGTGGAATGG 5183110 Query 89178 TTTACATGGAAAGAATTATTCGATCCTGTCTTGCATATAGAACTTAG-GAGGTGGGCTGA 89236 | | ||| |||| | |||||||| |||||||| || |||| || ||||| || Sbjct 5183111 GCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATATTGAT-TTAGTGAAATGGGCCGA 5183169 Query 89237 TATATTTATTATCGCGCCACTAACGGCTAATACTCTAGCGAAGATAGCTAATGGTATATG 89296 | ||||| | || || ||| || ||||||||||| | || ||||||| ||||||||| Sbjct 5183170 TTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGTAAAATAGCTAGTGGTATATG 5183229 Query 89297 CGACAACTTACTAACTTCTATAGTTAGGGCATGGGATATATCAAAGCCCCTTATTTTTTG 89356 || || || |||||| | | | | || |||||| || |||||| | | ||||| Sbjct 5183230 TGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCATTAAAGCCTTTGGTCTTTTG 5183289 Query 89357 TCCTGCCATGAATACTCTAATGTGGGAACATCCTATTACTGAATCACA 89404 ||||||||||||||| ||||||||||||||| |||||| | |||| Sbjct 5183290 TCCTGCCATGAATACAAAAATGTGGGAACATCCCGTTACTGCAACACA 5183337 >seq1429 Length=9113309 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 32858 TTTTATACATGTTATAATGTATAGTTATTACGGATTAACAGCAATAGGTCCTTCCTTGCG 32917 |||||| ||||| | |||||| ||||| || || | ||| | || |||||| | Sbjct 1763581 TTTTATCCATGTCCTTATGTATTCATATTATGGTTTGGCCGCATTGGGACCTTCCGTAGC 1763522 Query 32918 AAAATATCTATGGTGGAAAAAATATTTAACTATCATACAATTGATGCAGTTT 32969 |||||||| ||||||||||||||||| || ||| | |||||||| |||||| Sbjct 1763521 TAAATATCTCTGGTGGAAAAAATATTTGACGATCCTTCAATTGATCCAGTTT 1763470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603120889067040