Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1955 127 1e-24 seq3153 113 3e-20 seq4594 91.5 9e-14 seq7885 84.2 1e-11 >seq1955 Length=5322578 Score = 127 bits (140), Expect = 1e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | ||| || | ||| ||||| ||| || ||||| ||||||||||| Sbjct 1861711 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1861770 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | |||||||||||||| || ||||| || ||||| ||||| || || || Sbjct 1861771 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1861830 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658 | ||| || || ||| ||||| |||| ||||||||| ||| || || Sbjct 1861831 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCT-TCAAC 1861889 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||| | ||| || ||||| || ||||| || || ||||| |||||||| || || Sbjct 1861890 TTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTTTAT 1861943 Score = 127 bits (140), Expect = 1e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | ||| || | ||| ||||| ||| || ||||| ||||||||||| Sbjct 1864351 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1864410 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | |||||||||||||| || ||||| || ||||| ||||| || || || Sbjct 1864411 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1864470 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658 | ||| || || ||| ||||| |||| ||||||||| ||| || || Sbjct 1864471 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCT-TCAAC 1864529 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||| | ||| || ||||| || ||||| || || ||||| |||||||| || || Sbjct 1864530 TTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTTTAT 1864583 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| |||| ||| ||||| ||| |||||||| || ||||||||| Sbjct 1861029 CCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAA 1861088 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | |||||||| ||||| || ||||| || ||||| || || || || || Sbjct 1861089 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGA 1861148 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658 | ||| || || ||| ||||| ||||| | ||||||||| ||| || || Sbjct 1861149 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCT-TCAAC 1861207 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || | ||||| ||||| || ||||| Sbjct 1861208 TTCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | ||| || |||||||| || |||||||| || ||||||||||| Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | ||||||||| ||||| || ||||| || ||||| || || Sbjct 1861543 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGA 1861602 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658 | ||| || |||||| ||||| |||| | ||||||||| ||| || || Sbjct 1861603 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCT-TCAAC 1861661 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || | ||||| ||||| || ||||| Sbjct 1861662 TTCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 Score = 107 bits (118), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| ||||| |||| ||| ||||| ||| || ||||| ||||||||||| Sbjct 1860802 CCTCCTCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1860861 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | |||||||| ||||| || ||||| || ||||| |||||||| ||||| Sbjct 1860862 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGG- 1860920 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT-CTTCGCTCTCCAC 34658 | | ||| ||| ||| ||||| |||| ||||| | | ||| || || Sbjct 1860921 AATTCCTTCTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCT-TCAAC 1860979 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || | ||||| ||||| |||||||| Sbjct 1860980 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1861027 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | |||||| |||||||| || || ||||| || |||||||||| Sbjct 1861257 CCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTG-- 1861314 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| || |||||||| ||||| || || || || || || || || Sbjct 1861315 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 1861374 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT-CTTCGCTCTCCAC 34658 | ||| || || ||| ||||| ||||| | ||||||| | ||| || || Sbjct 1861375 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCT-TCAAC 1861433 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || | ||||| ||||| || ||||| Sbjct 1861434 TTCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536 || || || | ||| | ||| |||||||| || || || ||||| || || |||||| Sbjct 1860571 TCTCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCT 1860630 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||||||| | |||||||||||||| || ||||| || || || || || || || Sbjct 1860631 AAAAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGA 1860690 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT-CTTCGCTCTC 34655 || | ||| || || ||| ||||| ||||| ||||| | | ||| || Sbjct 1860691 GGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCT-TC 1860749 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || || | ||||| ||||| |||||||| Sbjct 1860750 AACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 >seq3153 Length=1268 Score = 113 bits (124), Expect = 3e-20 Identities = 172/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | || || |||||||| || || ||||| || || |||||||| Sbjct 1195 CCTCCTCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAG 1136 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||||||||||||||| ||||| || || || ||||| || || || Sbjct 1135 AGTGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGA 1076 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | ||| || || ||| ||| ||| | || || | || || ||| ||| || | Sbjct 1075 ATTCCTTCTTTATCTTGGAT-TTTAGCCTTTACATTCTCTATAGTATCTGAAGCT-TCAA 1018 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGTA 34716 |||| | || || ||||| || |||| ||||| ||||||||||||| |||||||| Sbjct 1017 CTTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCA---TGATTGTA 962 >seq4594 Length=760 Score = 91.5 bits (100), Expect = 9e-14 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | |||||| || || || || || || |||||||||||||||||| Sbjct 653 CCTCCTCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGAA 712 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGT 34587 || |||| | ||||| ||||||||||| ||||| |||||||| ||| Sbjct 713 AGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGT 760 >seq7885 Length=810 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| ||||| || || || ||||||||||| ||| Sbjct 294 CCACCACGAAGACGAAGTACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAA 353 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| | |||||| || ||||| || | | |||||| || || || Sbjct 354 AGTGTACGACCATCTTCTAATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGA 413 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || ||||| ||| ||| ||| || ||||| | ||| || || ||| || | Sbjct 414 ATACCTTCCTTATCT-TGAATTTTAGTCTTAACATTTTCAATAGTATCGGAAGCT-TCAA 471 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || ||||| || || | ||||| || ||||| ||||| Sbjct 472 CCTCCAGAGTGATGGTTTT-CCCGTAAGAGTTTTAACGAAAATTTGCAT 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314699120995418