Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7885 154 1e-32 seq1955 145 7e-30 seq2112 140 3e-28 seq878 129 5e-25 seq182 120 3e-22 seq3153 114 1e-20 seq74 111 1e-19 seq2791 91.5 1e-13 >seq7885 Length=810 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || |||||||||| ||||| ||| | ||| Sbjct 747 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCC 688 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||||||||||| || || ||||| ||| Sbjct 687 GATACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAA 628 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||||| ||||| || || |||||||||| || Sbjct 627 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTATAAT 568 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | ||| | ||| | || | || ||||| || Sbjct 567 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTACGACTTCGTGGTGGTAT 518 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||||||||||||||| || || || | |||||| | ||||| ||| | || Sbjct 292 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 233 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||||| || ||||| || ||||| ||||| Sbjct 232 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 173 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || ||||| | ||||| || || |||| ||||| || Sbjct 172 CAGAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACACTTTCGGATTATAAT 113 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || ||||||| || |||||||| | ||||| || Sbjct 112 ATTCAAAAAGAATCAACACTACATTTAGTACTGCGTTTGAGAGGTGGAAT 63 Score = 102 bits (112), Expect = 7e-17 Identities = 173/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || || | || ||||| || || ||| | ||| Sbjct 519 ATGCAAATTTTCGTTAAAACTCTTACGGGAAAACC-ATCACTCTGGAGGTTGAAGCTTCC 461 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||||||||||| || ||||| || || || |||||| Sbjct 460 GATACTATTGAAAATGTTAAGACTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 401 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || |||||||| ||||| || || |||| ||||| ||| Sbjct 400 CAGAGACTGATCTTTGCAGGAAAACAATTAGAAGATGGTCGTACACTTTCGGATTATAAC 341 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || || || || || || | ||| | || | ||| | || ||||| || |||| | Sbjct 340 ATCCAGAAAGAATCAACTCTTCATCTTGTACTTCGTCTTCGTGGTGGTAT-GCAAATA-- 284 Query 27228 TTTGTAA 27234 ||||||| Sbjct 283 TTTGTAA 277 >seq1955 Length=5322578 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || |||| ||||||||||| ||| | || Sbjct 1861255 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTCA 1861196 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || |||||||| |||||||| || ||||| ||||| Sbjct 1861195 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCAG 1861136 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || |||||||| | ||||| | || |||| |||||||| Sbjct 1861135 CAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAAT 1861076 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || | ||| |||| ||||| | ||||| || || Sbjct 1861075 ATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGGAAT 1861026 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || |||| || |||||||| ||| | || Sbjct 1861709 ATGCAAATCTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTCA 1861650 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||||||||||||||| || || || || || Sbjct 1861649 GACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCAG 1861590 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| ||||| | || | || ||||| || Sbjct 1861589 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTATAAT 1861530 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || |||||||| || || | ||||| || ||| Sbjct 1861529 ATCCAAAAGGAATCTACACTCCATTTAGTATTG 1861497 >seq2112 Length=2858 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || || |||||||||||||||| ||| | ||| Sbjct 165 ATGCAAATTTTCGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 224 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||||||||| ||||| || ||||| || ||| Sbjct 225 GATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGTATTCCACCTGACCAA 284 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||||| ||||| | || |||||||||| || Sbjct 285 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGACGTACACTTTCCGATTATAAT 344 Query 27168 ATTCAAAAGGAGTCGAC 27184 |||||||| || ||||| Sbjct 345 ATTCAAAAAGAATCGAC 361 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 ||||| | || ||| |||||||||||||||||||| || || || |||||||| | Sbjct 3 ATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAAAGA 62 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 || || | || || |||||||||||||| | || |||||||||| || |||||| Sbjct 63 TTGATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTCAA 122 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || | ||| | |||||||| | || ||||| || Sbjct 123 AAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGGAAT 166 >seq878 Length=1131996 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| |||| || || | || ||||| || || || | || Sbjct 558418 CATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTC 558477 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| |||||||||||| || ||||| || ||||| ||||| Sbjct 558478 AGATACCATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCA 558537 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | || || | || || |||||| | ||||| | || | || ||||| || Sbjct 558538 GCAAAGATTGATCTTTGCTGGAAAACAACTAGAAGATGGACGCACATTGTCTGATTATAA 558597 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || |||||||| || |||||||| | ||||| || Sbjct 558598 TATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTGAGAGGTGGAAT 558648 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || || | |||||| | ||||| ||| | || Sbjct 558647 ATGCAAATTTTTGTCAAAACGCTCACTGGAAAAACGATTACTTTAGAAGTTGAAGCTTCA 558706 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||| || |||||||| || || ||||||||| Sbjct 558707 GATACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCAA 558766 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||| | || || | || || |||||||||||||| Sbjct 558767 CAGAGATTGATTTTTGCTGGAAAACAATTGGAAGA 558801 >seq182 Length=1849075 Score = 120 bits (132), Expect = 3e-22 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 26946 TGATTTGTTAATAAGAGCAATAAATTT--TTTAATT---TATACGCC-ATGCAGATATTT 26999 |||||| ||| |||| | | | ||| ||||| | ||||| | |||||||||||| Sbjct 123078 TGATTTTTTATTAAGTGTACGATCTTTCTTTTAAATAGGTATACCACGATGCAGATATTT 123019 Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || |||||| |||| || || |||| ||||||||||| ||| | || || | || || Sbjct 123018 GTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCATCAGATACTATAGAA 122959 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | || ||| |||||||| || |||||||| |||||||| |||||||| ||| | || Sbjct 122958 AATGTGAAAGCTAAAATTCAGGATAAAGAAGGAATACCACCTGATCAACAACGTCTTATT 122899 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAA 27175 | || || || ||||| ||||| | || | || || || || |||||||| Sbjct 122898 TTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTGTCGGACTATAATATTCAAAA 122843 >seq3153 Length=1268 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || || || | || ||||||||||| ||| | || Sbjct 968 CATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 1027 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || |||| || || ||||| ||||| |||||||| || ||||| ||||| Sbjct 1028 AGATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCA 1087 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || || || | || || |||||| | ||||| | || | || |||||||| Sbjct 1088 ACAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAA 1147 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || ||||| || || || | ||||| || || Sbjct 1148 TATCCAAAAAGAATCTACACTCCATTTAGTATT 1180 >seq74 Length=1704272 Score = 111 bits (122), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||||| |||||||| || |||||| |||||||||||||||| ||| | | Sbjct 1125921 CCATGCAGATATTTGTGAAAACTCTAACAGGCAAGACTATTACTCTTGAAGTTGAAGCAT 1125980 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 | || | ||||| | || ||| |||||||||||| |||||||| Sbjct 1125981 CAGATACCATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGG 1126026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| | |||||| | ||||| | || || |||||||||||||| || Sbjct 1126086 AGGAATTCCACCTGGTCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGTAG 1126145 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| | || ||||| || ||||| ||||| || || ||||||||||| | ||||| | Sbjct 1126146 GACACTCTCAGATTATAATATTCAGAAGGAATCTACATTACATTTGGTGCTACGTTTAAG 1126205 Query 27209 GGGTGG 27214 |||||| Sbjct 1126206 GGGTGG 1126211 >seq2791 Length=1173271 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 ||||||||||||||||||| || ||||| || ||||| || ||| || | | | | Sbjct 938142 TAGGTTGTATGTGGTCTATCTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 938083 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAAT 135757 |||| || ||| | |||||||| ||||| ||||||| | ||||||||||| Sbjct 938082 TTGGAAAAATTAGATATATGAATTATGAAGGTTGTAAACGAAAATTTAAT 938033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434875201729920