Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_028854.1 Length=43724 Score E Sequences producing significant alignments: (Bits) Value seq6632 136 1e-27 seq4744 82.4 2e-11 >seq6632 Length=1117 Score = 136 bits (150), Expect = 1e-27 Identities = 191/262 (73%), Gaps = 12/262 (5%) Strand=Plus/Minus Query 36372 ACAATTGACCTTATTTCCGCAGGATACCCTTGCCAACCTTTCAGTAATGCCGGGAAGCGA 36431 ||||||||| ||||||||| ||| | ||| || || || ||||||| |||||| | || Sbjct 354 ACAATTGACATTATTTCCGGAGGGTTCCCCTGTCAGCCATTCAGTACAGCCGGGCACCGC 295 Query 36432 AAAGGCAAGGAAGATGACCGTCACCTCTGGCCAGAAGTTGCTCGAATCTTACAGGAAATC 36491 | ||||| |||||||||||| |||||||||||||| || | |||| | || ||| Sbjct 294 AGAGGCACAGAAGATGACCGTGACCTCTGGCCAGAA-ATGTTAGAAT-TGTCAAAGAATT 237 Query 36492 CGGCCCAATTGGTTCCTTGGTGAGAATGTTGCTGGGCACATATC---TCTGGGGCTCGAT 36548 ||||||||||| || |||| |||||||||||| || | | | ||| |||||| Sbjct 236 AGGCCCAATTGGGTCGTTGGAGAGAATGTTGCT---AACTTCGCCAATATGGAGCTCGA- 181 Query 36549 GACGT--GTTATCTGACTTGGAAAGCATCGGTTACGACACGCAAGCAATTGTTATTCCGT 36606 ||| ||||||| ||||||||||| || ||||| || ||| ||||| | || Sbjct 180 -CCGTACGTTATCTAACTTGGAAAGCCAAGGCTACGAAACAAGGGCATTTGTTTTACCAG 122 Query 36607 CTTGTGCCGTCGGTGCTCCGCA 36628 || ||| |||| || || || Sbjct 121 CTGCAGCCATCGGCGCCCCACA 100 >seq4744 Length=1121 Score = 82.4 bits (90), Expect = 2e-11 Identities = 198/293 (68%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 28684 TTTGCAGATGCCGTGTCAGCCAGTCAA-ACATCCATATTGGTTGGAGATTTGGCAAAAAT 28742 ||||||||| | || ||||| ||| | ||| | || || ||||| || | || || || Sbjct 507 TTTGCAGATACAGTTTCAGCAAGTGATGACA-CTATCTTAGTTGGTGAACTTGCCAAGAT 565 Query 28743 ATTGAAACAAAACGGTGTTAAAACGGGAGGAAAGAGGCTCTTTGAATGGATGCGAGCCAA 28802 |||||| || ||||| || | || ||| ||||| ||| | |||||||| | || Sbjct 566 TTTGAAAGGCAAAGGTGTAAATATTGGCCAAAATAGGCTTTTTAAGTGGATGCGTGATAA 625 Query 28803 TGGATACCTGATCAAGCGCCAGGGGGCG-GACTATAACATGCCAACGCAACGGGCAATGG 28861 ||| || |||| || || ||||| | ||| || | || || ||| | | |||| Sbjct 626 TGGCTATTTGATAAACCGG-AGGGGCAGTGACCGCAATGTTCCGACTCAAAAGTCTATGG 684 Query 28862 AAATGGGACTGTTTGAGATCAAAGAAACCTCGGTGACGCATAGTGATGGACACGTCACCA 28921 |||||||||| || |||| |||||||| | | ||| |||||| | | | Sbjct 685 AAATGGGACT-ATTCAGATTAAAGAAACAGTAATCAATCATCCTGATGGTAAGCCAAGTA 743 Query 28922 TTAACAAAACGTCCAAGGTTACAGGCAAAGGGCAAGTTTATTTTGTAAACAAG 28974 ||| || ||| | || || || || ||||| || |||||||| |||||| Sbjct 744 TTAGAAAGACGCCAAAAGTAACTGGTAAAGGCCAGCGCTATTTTGTGAACAAG 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139782009099672