Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_029058.1 Length=106071 Score E Sequences producing significant alignments: (Bits) Value seq6456 122 6e-23 seq5105 98.7 7e-16 >seq6456 Length=1742 Score = 122 bits (134), Expect = 6e-23 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 34815 GCTAAGGAATGGATTGCCCAGCATGAATCCAGCGGCTCCTACACTGCCCAGAACGGTCAA 34874 ||||||| ||||||||| | | |||||| ||||||| |||| ||| || ||||| ||| Sbjct 1348 GCTAAGGCATGGATTGCAAATCGTGAATCAGGCGGCTCATACAGTGCTCAAAACGGCCAA 1289 Query 34875 TACGTTGGTCGCTACCAACTTTCCAGC-TCTTACCTAAATGGTGACTATTCGCCAGCAAA 34933 ||| ||||| |||||||||| |||| || ||||| || |||||||| || | || || Sbjct 1288 TACATTGGTAAATACCAACTTT-CAGCTTCATACCTTAACGGTGACTACTCTGCTGCCAA 1230 Query 34934 CCAAGAACAAGTAGCTGACCAGTATGTCGCTTCACGCTATGGTTCGTGGAGTGCCGCTAA 34993 |||||||| || || || ||||| ||| || |||||||| ||| || ||||| Sbjct 1229 CCAAGAACGTGTTGCCAACAGTTATGTTGCTAACCGGTATGGTTCATGGTCAGCTGCTAA 1170 Query 34994 G 34994 | Sbjct 1169 G 1169 >seq5105 Length=1428 Score = 98.7 bits (108), Expect = 7e-16 Identities = 79/93 (85%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 30472 ACGGAGAATGAGGGATTTGAACCCTCGCACCGGTTT--CCCGGCCTACACCCTTAGCAGG 30529 ||||||| |||| ||||||||| |||||||||| | |||| |||||||||||||||| Sbjct 1166 ACGGAGACTGAGAGATTTGAACTCTCGCACCGGAATAACCCGATCTACACCCTTAGCAGG 1225 Query 30530 GGCGCCCCTTCAACCAACTTGGGTAATTCTCCA 30562 |||||| ||||| || ||||| |||| |||||| Sbjct 1226 GGCGCCTCTTCAGCC-ACTTGAGTAAGTCTCCA 1257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339269541319392