Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq1803 159 3e-34 >seq1803 Length=3366 Score = 159 bits (176), Expect = 3e-34 Identities = 369/548 (67%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 48729 TTCATTTGCATTTCCCACTTCATATCCTAATGGCTGATTCATATCTGTAATGACTGCAAT 48788 |||| || ||| || |||| ||||||||| ||||||||||| || | ||| ||||| || Sbjct 862 TTCAAGTGAATTGCCAACTTTATATCCTAAAGGCTGATTCATGTCGGAAATAACTGCCAT 921 Query 48789 TGTTTTTCGATTCAGATTTTTTCCAATATCAACCATTTCTTGTGCTAATGCTTTAGAGTC 48848 ||| | | ||| ||||| |||| | ||| ||||| || ||| || Sbjct 922 ACACTTTAAACCAACGCCTTTACCAATTGCAACTAAGGCTTTAGCTAAGGCAACAGAATC 981 Query 48849 TTCTAATGTTTTCATAAATGCTCCATTTCCTGTTTTAACATCTAATACAATTGCATCTGC 48908 ||||| || |||||||| || || ||| ||||| ||||| | ||| | |||||| | Sbjct 982 ATCTAAGGTCTTCATAAAGGCCCCCGATCCCGTTTTGACATCAATTACTAGTGCATCAGT 1041 Query 48909 TCCCATTGCGAtttttttACTCATAATGCTACTAGCAATTAATGGAATTGAATTAACTGT 48968 || || ||||||||||||||||| |||||||||||| ||||| || | || || Sbjct 1042 ACCAGAAGCAATTTTTTTACTCATAATAGAACTAGCAATTAACGGAATCGAGTCTACAGT 1101 Query 48969 TCCAGTAACATCGCGTAATGCATATA-ATTTTTTGTCGGCAGGCACTAAAATTCCACTTT 49027 | || ||||| | ||| || || | |||||| |||||||| | | | ||| || Sbjct 1102 ATCTGTGACATCCCTTAAAGCGTAAATTTTTTTTATCGGCAGGTGCAATATCACCAGTTG 1161 Query 49028 GTCCAACTAAT-GCGATTTTATGTGTATTAACTTGATTAATAAATTGTT-CTCTTGTTAA 49085 |||| |||| || | ||| | | || ||||| || ||||| | || ||| | | Sbjct 1162 CGCCAA-TAATAGCTAATTTTTCT-TAGCCACTTGTTTGATAAAATCTTGCTC-ACTGAT 1218 Query 49086 TTCTACGTTAAAGCCTTGTATAGATTCTAATTTGTCAATTGTTCCTCCTGTGTGCCCTAA 49145 ||| || | | ||| | || | || || || || | || || || || |||||||| Sbjct 1219 TTCAACTTGGTACCCTGGGATCGCCTCCAACTTATCCAAAGTACCACCGGTATGCCCTAA 1278 Query 49146 ACCTCTACCTGACATTTTAGCAACAGGAATACCCAAAGAAGCAACCAATGGAGCAACGAT 49205 || | || || || | | || ||||| ||| || ||||| | | ||| | Sbjct 1279 TCCCCGGCCAGAAATCATTGGGACCGGAATGCCCGTAGCCGCAACAACAGCAGCCAAAGG 1338 Query 49206 TAAACTAATTTTATCGCCGACTCCACCTGTGGAATGTTTATCTACTTTTACACCTTCGAT 49265 | ||| |||||||| || || || || || || || ||||| ||||| | ||| || Sbjct 1339 GATACTGATTTTATCACCAACACCTCCCGTTGAGTGCTTATCCACTTTAATTCCTGGAAT 1398 Query 49266 TTTTGATA 49273 || ||||| Sbjct 1399 TTGTGATA 1406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451980702557280