Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1955 95.1 9e-15 seq7885 91.5 1e-13 seq2112 87.8 1e-12 >seq1955 Length=5322578 Score = 95.1 bits (104), Expect = 9e-15 Identities = 153/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| |||||||||||||| || ||||||| |||| || ||| || Sbjct 1860801 AATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAA-GCTT 1860743 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || || || | ||| || ||| || || || |||||||| |||| || Sbjct 1860742 CGGATACAATAGAGAAT--GTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGA 1860685 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||||| || |||||||| || |||||| | || || | | | | | | ||||| Sbjct 1860684 TCAGCAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTTTAGATTA 1860625 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||| ||||||||||| || |||||||||| ||| Sbjct 1860624 CAATATCCAAAAAGAATCTACACTGCATTTGGTATTG 1860588 >seq7885 Length=810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||||||||| || ||| |||||| | || || ||| || Sbjct 747 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCC 688 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| |||||||||||| |||| || | Sbjct 687 GATACCATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCCGACC 630 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || || ||||| ||||||||||| || || | || | | |||||||| | Sbjct 629 AACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTATA 570 Query 27968 ACATCCAAAAAGA 27980 | || |||||||| Sbjct 569 ATATTCAAAAAGA 557 >seq2112 Length=2858 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || ||||| || || ||| |||||| |||| || ||| | Sbjct 164 AATGCAAATTTTCGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTC 223 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || ||| |||||| ||||| |||||| |||| || Sbjct 224 CGATACAATTGAAAAT--GTAAAAGCAAAAATTCAAGACAAGGAAGGTATTCCACCTGAC 281 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | || || ||||| ||||||||||| || || | ||| | | |||||||| Sbjct 282 CAACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGACGTACACTTTCCGATTAT 341 Query 27967 AACATCCAAAAAGA 27980 || || |||||||| Sbjct 342 AATATTCAAAAAGA 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355827937617942