Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1955 170 4e-37 seq7885 161 2e-34 seq2112 159 8e-34 seq3153 138 3e-27 seq878 122 2e-22 >seq1955 Length=5322578 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| | || || |||||||| ||||||||||| || || ||||| | ||| || Sbjct 1861035 CGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTT 1861094 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| ||||| ||||| || || || | ||||| || ||||| |||| |||| Sbjct 1861095 CTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCT 1861154 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| ||| || ||||| || ||||| || |||||| || ||| Sbjct 1861155 TCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGA 1861214 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| |||||||| || ||||| | |||||| Sbjct 1861215 GTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256 Score = 154 bits (170), Expect = 3e-32 Identities = 168/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| | || || |||||||| |||||||| || || |||||||| | || || Sbjct 1860808 CGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGAGTT 1860867 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| ||||| ||||| || || || | |||||||||||||| |||| |||| Sbjct 1860868 CTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGGAATTCCT 1860927 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 | ||| || || ||||| || || || || || || || || |||||| || || Sbjct 1860928 T-CTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGT 1860986 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || |||||||| || ||||| || ||||| | ||||||| Sbjct 1860987 GTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1861028 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | || || || || ||||||||||| || ||||| ||| || Sbjct 1860580 CGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAAAGTGTT 1860639 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || ||||| || || || | ||||| || |||||||||| |||| Sbjct 1860640 CTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCT 1860699 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| ||| || || || || || || || |||||| || || Sbjct 1860700 TCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGT 1860759 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || |||||||| || ||||| || ||||| | ||||||| Sbjct 1860760 GTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1860801 Score = 143 bits (158), Expect = 6e-29 Identities = 165/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | || || || || ||||||||||| |||||||| | || || Sbjct 1861263 CGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTG--AGAGTT 1861320 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| ||||| || || || ||||| | ||||| || || ||||||| |||| Sbjct 1861321 CTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATTCCT 1861380 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| ||| || ||||| || ||||| || |||||| || | | Sbjct 1861381 TCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAACTTCTAAA 1861440 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| || ||||| | ||||| Sbjct 1861441 GTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | || || || || || |||||||| |||||||| | || || Sbjct 1861489 CGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGTT 1861548 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| | || || || || ||||| | ||||| |||||||| |||| |||| Sbjct 1861549 CTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGAATTCCT 1861608 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || ||||| || || ||||| || ||||| || |||||| || || Sbjct 1861609 TCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGT 1861668 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| || ||||| || ||||| | |||||| Sbjct 1861669 GTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 1861710 >seq7885 Length=810 Score = 161 bits (178), Expect = 2e-34 Identities = 172/223 (77%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| |||||||| || ||||| |||||||||||||||| ||| || Sbjct 299 ACGAAGACGAAGTACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGTGT 358 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | || || ||||| ||||| || | ||||| |||||||||| || Sbjct 359 ACGACCATCTTCTAATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGAATACC 418 Query 211013 TTCCTTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||||| || || || ||| || || || ||||| || || || || ||||||||| | Sbjct 419 TTCCTTATCTTGAAT-TTTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACCTCCA 477 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||| || |||||||| ||||| || || || | ||||| Sbjct 478 GAGTGATGGT-TTTCCCGTAAGAGTTTTAACGAAAATTTGCAT 519 >seq2112 Length=2858 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| || |||||||| || |||||||| | ||| || | ||||||| Sbjct 376 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCT 317 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | || || || || ||||| | | ||||||||||| |||| ||||||||||| Sbjct 316 TCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCT 257 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| ||| || ||||| || || || || |||||| || ||||| || || Sbjct 256 TGAATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTT 197 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || |||||||||||||| || || | |||||| Sbjct 196 TTACCCGTGAGAGTCTTGACGAAAATTTGCATT 164 >seq3153 Length=1268 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||||| || | || || || || ||||||||||| || ||||| | || || Sbjct 1189 CGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGTT 1130 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || || || || ||||| | |||||||| || || |||| |||| Sbjct 1129 CTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCCT 1070 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || ||||| || || || || || || || || || |||||| || ||| Sbjct 1069 TCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGA 1010 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || || || ||||| | |||||| Sbjct 1009 GTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 >seq878 Length=1131996 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||||||||| || |||||||| | | || | ||||||||| || || || || Sbjct 558615 GTTGACTCTTTTTGAATATTATAATCAGACAATGTGCGTCCATCTTCTAGTTGTTTTCCA 558556 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | | ||| || || || |||| ||||||||| || || || ||| ||| Sbjct 558555 GCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTTGCTTTT 558496 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| ||||| || ||| |||||||| ||||| || || || || || | || Sbjct 558495 ACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTT 558436 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 558435 TTGACAAAGATCTGCAT 558419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159033988908290