Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1955 91.5 1e-13 seq7885 87.8 2e-12 >seq1955 Length=5322578 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||| ||| || || ||||||||| ||||| ||||| | ||| |||| | | Sbjct 1861041 CGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTTCTTCCA 1861100 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||||||||| ||||| || | ||| ||||| || | || | | ||||| Sbjct 1861101 TCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCTTCTTTA 1861160 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || || || ||| | | | | || || | || || || | |||||| Sbjct 1861161 TCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTGATA 1861220 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || ||||| |||||||||||||| Sbjct 1861221 GTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 >seq7885 Length=810 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| ||||||||||||| ||| || || | || || | ||||| || ||||| Sbjct 557 TCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAG 616 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | | ||| ||||||| || | | |||||||| ||||| ||| | | Sbjct 617 ATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTT 676 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| | || || |||| || ||| |||| ||||| || ||||||||| Sbjct 677 TCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAACA 736 Query 39274 AAGATTTGCAT 39284 || |||||||| Sbjct 737 AAAATTTGCAT 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429504001998698