Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3153 152 3e-32 seq878 141 6e-29 seq1955 129 4e-25 seq7885 127 1e-24 seq2112 91.5 1e-13 seq2440 86.0 4e-12 >seq3153 Length=1268 Score = 152 bits (168), Expect = 3e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||||||||| || |||||||| |||||||| |||||||| | | Sbjct 969 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 1028 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | |||| ||||| || |||||||| | || ||||||||| Sbjct 1029 GATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 1088 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| || |||||||| ||||| | | | || | |||||||| Sbjct 1089 CAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAAT 1148 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || ||| | |||||||| ||||| | |||||||| Sbjct 1149 ATCCAAAAAGAATCTACACTCCATTTAGTATTAAGACTTCGAGGAGG 1195 >seq878 Length=1131996 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||| || ||||| || ||||| || | Sbjct 558419 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 558478 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| ||||||| || || ||||| | || |||||||| Sbjct 558479 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAG 558538 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| || |||||||| ||||| | |||||| || ||||| || Sbjct 558539 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGATGGACGCACATTGTCTGATTATAAT 558598 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||||||| |||||||||||||| | | ||| |||| ||| Sbjct 558599 ATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTGAGAGGTGGA 558646 Score = 118 bits (130), Expect = 7e-22 Identities = 122/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| ||||| ||||||||||| ||| | |||||||| | | Sbjct 558646 AATGCAAATTTTTGTCAAAACGCTCACTGGAAAAACGATTACTTTAGAAGTTGAAGCTTC 558705 Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| ||| |||| ||||| | |||||| || ||||||||| | || || |||| Sbjct 558706 AGATACTATTGAAAATGTTAAAGC-TAAAATTCAGGATAAAGAAGGTATTCCTCCCGATC 558764 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 ||||| | || || ||||| || |||||| ||||||| Sbjct 558765 AACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGA 558801 >seq1955 Length=5322578 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| ||||| |||||||| |||||||| |||||||| | | Sbjct 1861256 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTC 1861197 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| ||||| || ||| || |||||||| | || || ||||| Sbjct 1861196 AGACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCA 1861137 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || ||||| |||||||| || ||||| | | | ||| | |||||||| Sbjct 1861136 GCAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAA 1861077 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||||||| || | ||| | || || | | || |||||| Sbjct 1861076 TATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGGA 1861028 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || |||||||| || || ||||| || || || || |||||||| | | Sbjct 1860801 AATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 1860742 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | || | ||||| || ||| || |||||||| | || || ||||| Sbjct 1860741 GGATACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 1860682 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 || || || || ||||| ||||||||||| ||||| | | | |||||| |||||| Sbjct 1860681 GCAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTT--TAGATTAC 1860624 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || |||||||| || ||| | ||||| || || || | || |||||| Sbjct 1860623 AATATCCAAAAAGAATCTACACTGCATTTGGTATTGAGACTTCGGGGAGGA 1860573 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || || |||||||| ||||| || |||||||| | | Sbjct 1861710 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTC 1861651 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| |||| || ||| ||||||||||| | || || || || Sbjct 1861650 AGACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 1861591 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || ||||| || |||||| | ||||| | | | ||| | ||||| || Sbjct 1861590 GCAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTATAA 1861531 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || ||| | |||||||| || || | |||||||| Sbjct 1861530 TATCCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTCGAGGAGG 1861483 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || ||||| || | || |||||||| ||||| | |||||||| | Sbjct 1861940 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCT 1861881 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || ||| || |||||||| | || |||||| Sbjct 1861880 TCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGAT 1861821 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || ||||| ||||||||||| ||||| | | || | ||||| Sbjct 1861820 CAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 1861761 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || |||||||| || | ||| |||| || || | ||||| ||| Sbjct 1861760 AATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGGA 1861710 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || ||||| || | || |||||||| ||||| | |||||||| | Sbjct 1864580 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCT 1864521 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || ||| || |||||||| | || |||||| Sbjct 1864520 TCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGAT 1864461 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || ||||| ||||||||||| ||||| | | || | ||||| Sbjct 1864460 CAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 1864401 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || |||||||| || | ||| |||| || || | ||||| ||| Sbjct 1864400 AATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGGA 1864350 >seq7885 Length=810 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || ||||| ||||| || ||||| |||||||| | | Sbjct 747 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCC 688 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| |||||| |||||||||||| | || || || ||| Sbjct 687 GATACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAA 628 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || |||||| | ||||| | || ||| | |||||| || Sbjct 627 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTATAAT 568 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || |||||||| || || | ||| | ||| || Sbjct 567 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTA 535 Score = 120 bits (132), Expect = 2e-22 Identities = 150/200 (75%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| || ||||| ||||| |||||||| || ||||| | | Sbjct 519 ATGCAAATTTTCGTTAAAACTCTTACGGG-AAAACCATCACTCTGGAGGTTGAAGCTTCC 461 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| |||| || |||||| || || |||||| | || || ||||| Sbjct 460 GATACTATTGAAAATGTTAAGAC-TAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCA 402 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 |||| | | || ||||| || |||||| | ||||| | || |||||| | ||||| Sbjct 401 ACAGAGACTGATCTTTGCAGGAAAACAATTAGAAGATGGTCGTACACTTTCG--GATTAT 344 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||| || || Sbjct 343 AACATCCAGAAAGAATCAAC 324 >seq2112 Length=2858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 23678 TTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737 |||||| ||||| |||||| |||||||||||| | || || |||||||| | | Sbjct 4 TTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAAAGAT 63 Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797 | || ||||| || |||||| ||||||| | || ||| | |||||| || || |||| Sbjct 64 TGATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTCAAA 123 Query 23798 AAGAGTCCACATTACATTTAGTTTT 23822 |||| || ||| | ||| | ||||| Sbjct 124 AAGAATCTACACTTCATCTTGTTTT 148 >seq2440 Length=2833704 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 32826 ACATAATCTTTTCCTTTAATCAATTTTACGTATTGACAATTGGGAAACCAACGAGCGTGC 32885 |||||||||| |||||||| | || || | ||| || | |||||| || || Sbjct 836577 ACATAATCTTGTCCTTTAACTGTTAATAAATAATAACACTTAGAAAACCACTTTGCATGT 836518 Query 32886 ATATGCCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGCAGTAAAAACAC 32945 | |||||| | || || | |||||||||||| ||||| | | || | | |||| Sbjct 836517 TGTTCCCAAGGATTATCTTCTGGTTCCCAATCTTTTAAACCACATCCACAATGATAACAT 836458 Query 32946 ACAACTTTGTCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATTGTGTGGGTTTC 33005 | | || || ||| |||| ||||| ||||||| || |||||||||||| | | Sbjct 836457 ATAGTTTGATCACCTTTTCCTGTATAATAAAAACCTGCATCTGCTAATTGTTCTTTTGTT 836398 Query 33006 TGTTGCAAAGATTTTGGCCA 33025 ||| ||| |||||||||||| Sbjct 836397 TGTGGCATAGATTTTGGCCA 836378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337976866516568