Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1955 158 3e-33 seq7885 147 5e-30 seq2112 145 2e-29 seq3153 132 1e-25 seq2323 122 2e-22 seq182 122 2e-22 seq878 120 7e-22 seq7946 113 1e-19 seq298 113 1e-19 >seq1955 Length=5322578 Score = 158 bits (174), Expect = 3e-33 Identities = 168/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || | ||||| || ||||||||||||| ||| ||||| | | |||| Sbjct 1861263 CGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTG--AGAGTT 1861320 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||||||||| || ||||| ||||| | |||||| || || || ||||| ||| Sbjct 1861321 CTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATTCCT 1861380 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| ||||| || ||| ||| || ||||| || | ||| || ||||| Sbjct 1861381 TCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAACTTCTAAA 1861440 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||| || | |||||| | || | |||||| Sbjct 1861441 GTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 127 bits (140), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || || || ||||| || ||||| || | ||| ||||| | | |||| Sbjct 1860808 CGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGAGTT 1860867 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| ||||| || ||||| || || | ||||||||||| |||||||| ||| Sbjct 1860868 CTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGGAATTCCT 1860927 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 | ||| ||||| ||||| ||| ||| || || || || || | ||| || || | Sbjct 1860928 T-CTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGT 1860986 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | |||||| | || | |||||| Sbjct 1860987 GTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1861028 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || | || || || ||||||||||||| ||||||||| | ||| Sbjct 1860580 CGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAAAGTGTT 1860639 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| || || || ||||| || || | |||||| || || || ||||| ||| Sbjct 1860640 CTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCT 1860699 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| ||||| || ||| || || || || || | ||| || || | Sbjct 1860700 TCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGT 1860759 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | |||||| | || | |||||| Sbjct 1860760 GTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1860801 >seq7885 Length=810 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || || ||||| || ||||||||||| | ||| ||||||| | ||| Sbjct 526 ACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAAAGAGT 585 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| || || ||||| ||||| | || ||||||||||| |||||||| Sbjct 586 ACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGAATACC 645 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| |||||||| || ||| || || ||| ||| ||||| || || | ||| || || | Sbjct 646 TTCTTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCCA 704 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| | |||||| | || | |||||| Sbjct 705 GAGTAATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 Score = 127 bits (140), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || ||||| |||||||| |||| || ||||| | | || Sbjct 299 ACGAAGACGAAGTACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGTGT 358 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| || || || || ||||| |||| ||||| || || |||||||| Sbjct 359 ACGACCATCTTCTAATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGAATACC 418 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| || || ||| ||| ||| || || || || | ||| || || | Sbjct 419 TTCCTTATCTTGAATTTTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACCTCCAG 478 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || ||||| | |||||| | ||| | |||||| Sbjct 479 AGTGATGGT-TTTCCCGTAAGAGTTTTAACGAAAATTTGCAT 519 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || ||||||||||| | ||| ||||| | | || | |||||||| ||||| Sbjct 90 TGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCGAGCTGT 149 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | || || || || || |||||||||||||| ||||| || || Sbjct 150 TTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTTA 209 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| ||| || || || || | ||| || ||||| || || || || || || Sbjct 210 GTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTA 269 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | |||||||| || | |||||| Sbjct 270 AGAGTTTTTACAAATATTTGCAT 292 >seq2112 Length=2858 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||| ||||||||||| | ||| ||||||| | || | |||||| Sbjct 376 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCT 317 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||| ||||| | || |||||||| || |||||||||||||||||| Sbjct 316 TCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCT 257 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || |||||| || ||| ||| || || || || | ||| || || | || || || Sbjct 256 TGAAT-TTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGT 198 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| | ||| || | ||| | ||||||| Sbjct 197 TTTACCCGTGAGAGTCTTGACGAAAATTTGCATT 164 Score = 109 bits (120), Expect = 1e-18 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| || || || ||||||||||| | ||| ||||||| | ||| Sbjct 158 ACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGGAAAGAGT 99 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||| || || | || |||||| || || |||||||| Sbjct 98 ACGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAGGAATACC 39 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGG 225649 ||| |||||||| || ||| || || ||| ||| |||| Sbjct 38 TTCTTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATGG 1 >seq3153 Length=1268 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||| | || | ||||| || ||||||||||||| ||||||||| | | ||| Sbjct 1189 CGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGTT 1130 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| || || || ||||| ||||| | ||||||||| || || ||||| ||| Sbjct 1129 CTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCCT 1070 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || |||||||| || ||| ||| || || || ||||| | ||| || || | Sbjct 1069 TCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGA 1010 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || || || | ||||| Sbjct 1009 GTGATGGTTTTTCCAGTTAGGGTTTT 984 >seq2323 Length=1727961 Score = 122 bits (134), Expect = 2e-22 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| || || |||||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 978049 GAAAATTTGTCCGTCGGTAATAGAAATAACATTTGTGGGAATATATGCAGACACATCACC 977990 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||| | |||||||| ||||||| ||| ||||| || ||| ||| ||| Sbjct 977989 AGCTTGTGTTTCAATGACAGGTAAAGCTGTTAATGAACCACCTCCCAAACTTTCATT 977933 >seq182 Length=1849075 Score = 122 bits (134), Expect = 2e-22 Identities = 134/176 (76%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||| | ||| || || | |||||| | |||||||||| ||||| ||||| || | Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT-CACAGCT 225642 |||| |||||||| || || || || ||||| || || || || ||| |||| |||| | Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAAT-TTTAGCTTTCACATTT 122959 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || ||||| | ||| || || | ||||| || || |||||||||||||| Sbjct 122960 TCTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTT 123015 >seq878 Length=1131996 Score = 120 bits (132), Expect = 7e-22 Identities = 138/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || |||||||| | ||| ||||| | ||| || | ||||||||||| || || ||| Sbjct 558615 GTTGACTCTTTTTGAATATTATAATCAGACAATGTGCGTCCATCTTCTAGTTGTTTTCCA 558556 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || ||||| | || ||| || || || ||||| |||||||| ||||| || |||||| || Sbjct 558555 GCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAAT-TTTTGCTTT 558497 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| ||||| ||||||| || || || | || || || || || ||||| || Sbjct 558496 TACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGT 558437 Query 225696 TTT 225698 ||| Sbjct 558436 TTT 558434 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | || || ||||| || || | || ||||| ||||| ||||||||||| Sbjct 558804 CCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCT 558745 Query 225616 TTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || || || || ||| || || ||| ||| || || ||||| | ||| || ||||| || Sbjct 558744 TTATCCTGAAT-TTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGT 558686 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || | ||||| | || | ||||||| Sbjct 558685 AATCGTTTTTCCAGTGAGCGTTTTGACAAAAATTTGCATT 558646 >seq7946 Length=17694 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638 ||||| ||| | || ||||| ||| | ||||| || || |||| || || ||||||||| Sbjct 2476 CATGCATTTTTAATAATTTTTTTTATAGTTATACCATTTTTGATTGGAGGATTCGGAAAT 2535 Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698 ||||| |||| ||||| | || |||||||||| || |||||| | | || ||||| Sbjct 2536 TGATTAATTCCATTAATATTAGGATCTCCTGATATAGCATTTCCACGAATAAATAATATT 2595 Query 7699 AGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || ||||||||||| || || || ||| |||| Sbjct 2596 AGATTTTGATTACTTCCTCCATCATTAATTCT 2627 Score = 111 bits (122), Expect = 4e-19 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct 3021 TTCTGGATGTCCAAAAAATCAAAATAAATGTTGATAAAGAATAGGATCTCCTCCTCCTAT 2962 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 |||||||||||| ||||||||||||| |||| Sbjct 2961 TGGATCAAAAAATGATGTATTAAAATTTCGATCA 2928 >seq298 Length=2067 Score = 113 bits (124), Expect = 1e-19 Identities = 102/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 1396 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 1337 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||||||||||||||||||| | | |||| ||| | || | || Sbjct 1336 CCGTCAATTCCTTTGAGTTTTAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 1277 Query 7855 GTTAGCT 7861 ||||||| Sbjct 1276 GTTAGCT 1270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192409790634524