Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2024 109 5e-19 >seq2024 Length=8919894 Score = 109 bits (120), Expect = 5e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 ||||||||| ||||| | |||||| || |||| ||||| || || || || | || || Sbjct 2396634 ATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTC 2396693 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 ||||| ||| ||||| | || ||||| ||| || | || || || || || || ||| Sbjct 2396694 TGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTCTCATTGACAATTCCATCAGA 2396753 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 ||||||||||| || || |||||||||||||| Sbjct 2396754 TGCTGCAAAAAATGCTAAGACATGAGATATAAA 2396786 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 4369 CTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTC 4428 ||||||| |||| || || |||||||| ||||| || | ||| |||| ||||| || | Sbjct 2395979 CTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGC 2396038 Query 4429 CAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTG 4488 | || | | ||||||| || | ||| ||||| |||||||| || | || || || Sbjct 2396039 CTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTTAACAGCATCCT 2396098 Query 4489 TGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAAC 4548 | || || | | | | || ||||||||| | ||| | || | |||| ||||| Sbjct 2396099 TAATAATTGATGTAACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAAC 2396158 Query 4549 ACGCAAAATCACAATGCAAACC 4570 | |||||||||||||| || || Sbjct 2396159 ATGCAAAATCACAATGTAATCC 2396180 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 |||||| | ||| |||||||| || |||||||| || ||||| |||||||||||||| Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 |||||||||||| | ||||| |||| | |||||||| Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCT 2396997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427008243716018