Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1429 188 1e-42 seq2024 154 2e-32 >seq1429 Length=9113309 Score = 188 bits (208), Expect = 1e-42 Identities = 228/309 (74%), Gaps = 1/309 (0%) Strand=Plus/Minus Query 77030 TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT 77089 ||| || || ||| || || ||||||| ||| || ||||| |||| ||| | | || Sbjct 7667342 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCT 7667283 Query 77090 CTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCT 77149 || |||||| ||| | | ||||||||| || | |||||| ||||| |||| ||||| Sbjct 7667282 TTCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCT 7667223 Query 77150 ACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGC 77209 | ||||||||||| ||||| |||||||| | ||||||||| ||||| |||||||| || Sbjct 7667222 TCTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 7667163 Query 77210 AGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGAT 77269 || || || |||||||| ||||| | || ||| |||||| | |||| | | || Sbjct 7667162 TGTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATTTCTAACTCCATATTTAGCAAT 7667103 Query 77270 TTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTA 77329 ||| | ||| | ||| |||||||||| | || | || | ||||| ||| | |||||| Sbjct 7667102 TTTTTTTTTAAAATA-GTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCGTA 7667044 Query 77330 TTGTAGAAT 77338 ||||| ||| Sbjct 7667043 TTGTAAAAT 7667035 Score = 168 bits (186), Expect = 9e-37 Identities = 229/316 (72%), Gaps = 10/316 (3%) Strand=Plus/Minus Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || || ||||| ||||||||||| ||||| || | |||||| | |||||||||||||| | Sbjct 7665259 TTACCAGTATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 7665200 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 ||||| || | ||||||||| |||||| ||||| ||||| | ||||| || || ||| Sbjct 7665199 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 7665140 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || || ||||| | ||||||||| | ||| |||||| ||| ||| |||| || Sbjct 7665139 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 7665080 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGA 78304 | || ||||| |||||| |||| | || || || || || || ||| Sbjct 7665079 GTACCTCTTGCTCGAATA----CAATGTACATTAAGTCCAATACCACCAGCTGATTTACT 7665024 Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA-TGT 78363 || || ||||| | ||| ||||||||||| || || || ||||| || || ||| ||| Sbjct 7665023 AATGAGTGCGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGT 7664964 Query 78364 TAAGAAGAAAACAGCT 78379 ||| || |||||| || Sbjct 7664963 TAATAA-AAAACAACT 7664949 Score = 156 bits (172), Expect = 6e-33 Identities = 252/359 (70%), Gaps = 10/359 (3%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| |||||||||||||| ||| || || | ||||||||||||||||||||||| | Sbjct 7666676 TACCTATAGGTCTATGTCTAAAATTTGACTTTCTCGCTTCTGGAATAGGATAATAATTGA 7666617 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || |||||||| | |||||| | | ||| | ||| || | | ||||| ||| Sbjct 7666616 CATCGATAATTTTGTCGAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 7666557 Query 77644 AATCAAATCTTCCATCTA-------TAACAAACATGTTCAAAGCTATAGATGCTAGATTA 77696 |||||||| || || || | |||||||| || | ||| || || |||| |||| Sbjct 7666556 AATCAAATGTTTGAT-TATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTA 7666498 Query 77697 CAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACAT 77756 || || || || |||| | ||| ||| || | | || ||||||| |||||||| Sbjct 7666497 CACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTC 7666438 Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAAT 77815 || || || || | |||||| || || || ||||| |||| || |||||||| || Sbjct 7666437 TTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGA-TCTTTATAAAGCAT 7666379 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 | | ||||| || ||||||| || || | ||||| | |||| | ||||||||| Sbjct 7666378 ATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 7666320 Score = 134 bits (148), Expect = 2e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| || ||||||||||| |||||||||||| | | ||||| |||||| ||| Sbjct 7665980 GTATAAAGAATTTCAAATTCATTGCCCCAAACATCAGCTAGACCAGGAGATTCATGTGGA 7665921 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || | ||| ||||| ||| ||||||||||||||| ||||||||||||||| Sbjct 7665920 CACATTAAAGTCCATATACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCAT 7665861 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 |||||| |||| |||| | ||||| |||||| || ||||| Sbjct 7665860 AGAGCATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 7665817 Score = 125 bits (138), Expect = 1e-23 Identities = 200/286 (70%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 78367 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATG 78426 ||| || | | ||||||||||| || || ||| | |||| ||| | ||| ||||||| Sbjct 7664893 GAAAAATATACCTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATG 7664834 Query 78427 CATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCC 78486 |||| ||||| | ||| || | | ||| || ||||| |||||| || || || Sbjct 7664833 CATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTATCAATATCTT 7664774 Query 78487 ATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTAT 78546 ||| || | || || || | ||| ||||||||||| ||||||||||| || Sbjct 7664773 CACCATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTC 7664714 Query 78547 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 78606 || |||||| || || || | |||| | ||||| ||||||||||| || || || Sbjct 7664713 CATGTATTTTTAATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAA 7664654 Query 78607 AGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 | ||||| || ||||| || ||||||||| ||| |||| |||| Sbjct 7664653 AATCTCTATCATAAATTATTGCAGAATTTAACTTA--TTTGCATTT 7664610 >seq2024 Length=8919894 Score = 154 bits (170), Expect = 2e-32 Identities = 168/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 48396 TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCA 48455 |||| |||| || ||| ||||| ||||| | | ||||||||| || |||| |||||| Sbjct 2396600 TTGC-ATCTGCAATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCC 2396658 Query 48456 ATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAAT 48515 || || | ||||| || || ||||| | || ||||| || ||||| || || |||| Sbjct 2396659 ATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAAT 2396718 Query 48516 CGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGT 48575 |||||| | | ||||||||| || ||||||||| || |||||||||||||| ||||| Sbjct 2396719 CGTTCAACAAGATTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGA 2396778 Query 48576 TTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 ||||||| |||||| ||| ||| | |||||||| ||| Sbjct 2396779 GATATAAAATGTTTTTCACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 125 bits (138), Expect = 1e-23 Identities = 165/225 (73%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 47937 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT 47996 ||| ||| |||||| | ||||||||| || | |||||||||||| ||||| |||||| Sbjct 2395954 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 2396013 Query 47997 CTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAAC 48056 ||| | || ||| ||||| ||||| | || ||| |||| || || || | ||| Sbjct 2396014 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 2396073 Query 48057 TCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTAC-CGTTTCCTCACTTGGTGG 48115 |||||||| || | ||||||||| || || ||||| || ||| |||| | ||| Sbjct 2396074 TCTTGTTCAATTTTAACAGCATCCTTAATAATTGATGTAACTCGT----TCACAAGATGG 2396129 Query 48116 --ATACAACAA-ATGTTTAAACATTAAACATGCAAAATCACAATG 48157 | |||| ||||| |||||||||||||||||||||||||| Sbjct 2396130 TTTTTGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATG 2396174 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 |||| || | |||||||||||| |||||||||| ||||| || |||||||| ||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||| |||||| |||| || || |||| |||||||||| |||||||| Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTT 2397008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694599802021440