Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1429 196 7e-45 seq2024 152 7e-32 >seq1429 Length=9113309 Score = 196 bits (216), Expect = 7e-45 Identities = 217/288 (75%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 75646 TATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAG 75705 ||||||| ||| || || || |||| ||| | | ||| || |||||| ||| | | Sbjct 7667321 TATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTTAAATCTCGTAATAA 7667262 Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||||||||| |||| |||||| ||||| |||| ||||||| ||||||||||| ||||| Sbjct 7667261 ATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTTCTTGTGTAAATATTGCTGGT 7667202 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 |||||||| | ||||||||| ||||| |||||||| || ||||| || || ||||| || Sbjct 7667201 GTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCTGTTGATGCTGTTGGCATCGG 7667142 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 ||| | || ||| |||||| | |||| | | ||||| | ||| | ||| |||| Sbjct 7667141 TGCAATTAACAAAGAATTTCTAACTCCATATTTAGCAATTTTTTTTTTAAAATA-GTCCA 7667083 Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 |||||| | || | ||| | ||||| ||| | ||||||||||| ||| Sbjct 7667082 ATCCCATAAATTAGTTGGAATAACATTCCACATATCGTATTGTAAAAT 7667035 Score = 163 bits (180), Expect = 4e-35 Identities = 274/393 (70%), Gaps = 10/393 (3%) Strand=Plus/Minus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 |||| |||||||||||||| ||| || || |||||||||||||| |||||||| | Sbjct 7666676 TACCTATAGGTCTATGTCTAAAATTTGACTTTCTCGCTTCTGGAATAGGATAATAATTGA 7666617 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 ||| |||||||| | |||||| | ||| | ||| || | | ||||| ||| Sbjct 7666616 CATCGATAATTTTGTCGAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 7666557 Query 76239 AATCAAATTTTCCATCTATC-------ACAAACATATTAAGAGCTATAGATGCTAGATTA 76291 |||||||| || || ||| ||||||||||||| ||| || || |||| |||| Sbjct 7666556 AATCAAATGTTTGAT-TATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTA 7666498 Query 76292 CAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACAC 76351 || || || || |||| | | ||| ||| || | | || || |||| |||||||| | Sbjct 7666497 CACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTC 7666438 Query 76352 TTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC-ATGAGTCCTTATAAAGAAC 76410 || || ||||| | |||||| || || || || | |||| || |||||||| | Sbjct 7666437 TTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGA-TCTTTATAAAGCAT 7666379 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 | | |||||||| ||||||| || || | ||||| | |||| | ||||||||| Sbjct 7666378 ATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTTG 7666319 Query 76471 TATTATAGATTTGTATCGCTTCTCTCTTTCATA 76503 ||| ||| |||| ||||| ||||||| Sbjct 7666318 AATTTGTCGTTTATATCTTTTCTCATTTTCATA 7666286 Score = 154 bits (170), Expect = 2e-32 Identities = 223/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || || ||||| |||||||||||||| || || | |||||| | |||||||||||||| | Sbjct 7665259 TTACCAGTATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 7665200 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 ||||| || | | || |||| |||||| ||||| ||||| | ||||| || || ||| Sbjct 7665199 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 7665140 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || || ||||| | ||||||||| | || |||||| |||| ||| |||| || Sbjct 7665139 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 7665080 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 | || | ||| |||||| | | | || || || || || || |||| || Sbjct 7665079 GTACCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTACTAATG 7665020 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAG 76962 || || || | ||| ||||| || || || || || |||||||| || ||| |||||| Sbjct 7665019 AGTGCGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGTTAAT 7664960 Query 76963 AAGAAAACAGCT 76974 || |||||| || Sbjct 7664959 AA-AAAACAACT 7664949 Score = 132 bits (146), Expect = 7e-26 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 76506 GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCG 76565 ||||||| | ||||||||||| |||||||||||| | | ||||||| |||||| | Sbjct 7665982 GTGTATAAAGAATTTCAAATTCATTGCCCCAAACATCAGCTAGACCAGGAGATTCATGTG 7665923 Query 76566 GACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCC 76625 ||||||| || | ||| ||||| ||| ||| ||||||||||| ||||||||||||| Sbjct 7665922 GACACATTAAAGTCCATATACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 7665863 Query 76626 ATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||||| |||| |||| | |||| |||||| || ||||| Sbjct 7665862 ATAGAGCATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 7665817 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| || || || | | |||||| ||||| || || || ||||| ||||| || Sbjct 7666922 ATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCTAAAGCACCATA 7666863 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| | |||||| || |||| ||||||| | ||| || || ||| ||||| ||||| Sbjct 7666862 ATACAATGTTTCAAATATCTGAATATTAAGTTTTTGTGCCTCTTCACTTTCAAATGGATA 7666803 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | | | || |||||||||||| || || |||| ||||||||| Sbjct 7666802 ACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 7666758 Score = 104 bits (114), Expect = 3e-17 Identities = 185/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 76962 GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021 ||| || | | ||||||||||| || || ||| | |||| ||| | ||| ||||||| Sbjct 7664893 GAAAAATATACCTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATG 7664834 Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCC 77081 |||| || || | ||| || | | ||| || ||||| ||| || || ||||| Sbjct 7664833 CATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTATCAATATCTT 7664774 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT 77141 ||| || | || || || | ||| ||||||||||| |||| ||| || || Sbjct 7664773 CACCATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTC 7664714 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 77201 || |||||| || || || | |||| | ||||| ||||||||||| || || || Sbjct 7664713 CATGTATTTTTAATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAA 7664654 Query 77202 AGTCTCTTTCGTAAATAATAACCGAATTTA 77231 | ||||| || ||||| || | ||||||| Sbjct 7664653 AATCTCTATCATAAATTATTGCAGAATTTA 7664624 >seq2024 Length=8919894 Score = 152 bits (168), Expect = 7e-32 Identities = 160/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 || ||||| ||||| | | ||||||||||||||||| ||||| || || | ||||| Sbjct 2396614 TACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2396673 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATT 47018 || || ||||| | ||| || || || ||||| ||| || |||||||||| |||| ||| Sbjct 2396674 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCA-ACAAGATT 2396732 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078 |||||| || ||||||||| || ||||||||||| || ||||| ||||||| ||| Sbjct 2396733 CTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTT 2396792 Query 47079 TTCATCGGTAGTCAGTTTATTCCAGTCA 47106 |||| || ||| | |||||||| ||| Sbjct 2396793 TTCACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 46426 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAC 46485 ||| ||| |||||| | ||||||||| || | |||||||||||| ||||| ||||| Sbjct 2395954 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 2396013 Query 46486 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAAC 46545 ||| | || ||| ||||| ||||| | || || |||| || || || | ||| Sbjct 2396014 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 2396073 Query 46546 TCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605 ||||||||||| | ||||||||| || || ||||| ||| ||| | |||| Sbjct 2396074 TCTTGTTCAATTTTAACAGCATCCTTAATAATTGATGTAACTCGTTCACAAGATGGTTTT 2396133 Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATG 46646 || | | ||||| |||||||||||||||||||||||||| Sbjct 2396134 TGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATG 2396174 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 |||| || | |||||||||||| ||||||| || || || || |||||||| ||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 ||| |||||| | |||| || ||||||| |||||||||| |||||||| Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTT 2397008 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||| ||| | || || |||||| || || ||||| || || | ||||| Sbjct 2396289 TCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTTTT 2396348 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || ||||| || ||| ||| |||||| || |||||||| || || || || Sbjct 2396349 AACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAGCA 2396408 Query 46774 ACAAGTCTCTCTCCGTAACTGGCA---TCATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 || | | || || ||||| |||| || ||||| || ||||||| ||| Sbjct 2396409 ACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAGCT 2396468 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 ||||| ||||| |||| |||| ||||||||||| | ||||| Sbjct 2396469 TTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATAAAAAGT 2396514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712863587790720