Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2112 150 4e-31 seq1955 149 1e-30 seq7885 123 6e-23 seq3153 114 3e-20 seq878 113 1e-19 seq182 102 2e-16 seq74 84.2 5e-11 >seq2112 Length=2858 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||| || |||||||| || || ||||||| | || | |||||| Sbjct 376 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCT 317 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || || ||||| | ||||| ||||| | | || |||||||| ||| Sbjct 316 TCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCT 257 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| ||| | || | | || ||| || |||||||||||||||||| Sbjct 256 TGAATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTT 197 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || |||||||||||||| ||||| | |||||| Sbjct 196 TTACCCGTGAGAGTCTTGACGAAAATTTGCATT 164 >seq1955 Length=5322578 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||||||||||||||||||||| || |||||||| | | |||||| |||||||| Sbjct 1861047 ACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCTTCA 1861106 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| || || || || | | ||||| || | | |||||||| || |||||| Sbjct 1861107 AGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCTTCTTTATCTTGA 1861166 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||| ||| | |||| |||||||| || ||||||||||| |||||||| Sbjct 1861167 ATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTGATAGTTTTT 1861226 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || |||||||| || || |||| |||||| Sbjct 1861227 CCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256 Score = 129 bits (142), Expect = 1e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| || ||||| ||||||||||| || ||||| | | |||||| Sbjct 1861266 AGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTG--AGAGTTCTT 1861323 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | ||||| || | | |||||||| Sbjct 1861324 CCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATTCCTTCT 1861383 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || ||| ||| | |||| |||| ||| || ||||| | |||| Sbjct 1861384 TTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAACTTCTAAAGTA 1861443 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||||||| || || |||| ||||| Sbjct 1861444 ATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 127 bits (140), Expect = 5e-24 Identities = 155/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || |||||||||||||||||||| || || || ||||| | | |||||| |||||||| Sbjct 1860820 ACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGAGTTCTTCCATCTTCA 1860879 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| || || || || | | || ||||| | || ||||||| ||| |||||| Sbjct 1860880 AGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGGAATTCCTT-CTTATCTTGA 1860938 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || ||| |||||| | || ||| || |||||||| |||||||| || Sbjct 1860939 ATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAATAGTCTTT 1860998 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || |||| ||||||| Sbjct 1860999 CCAGTAAGAGTTTTAACAAAGATCTGCATT 1861028 Score = 122 bits (134), Expect = 2e-22 Identities = 161/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA---GTT 151943 ||||| | || | ||| || ||||| ||||||||||| ||||||| ||||| ||| Sbjct 1860583 AGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAAT---CTAAAAGTGTT 1860639 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || ||| || || || || | | ||||| || | | |||||| Sbjct 1860640 CTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCT 1860699 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||| || ||| ||| |||||| | || ||| || |||||||| Sbjct 1860700 TCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGT 1860759 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || || || ||||| || || |||| ||||||| Sbjct 1860760 GTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1860801 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||||||||||||||| || || || ||||| | | ||||| Sbjct 1861720 AGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTA 1861779 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || || || | | || || || | | |||||||| Sbjct 1861780 CCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCT 1861839 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || || ||| |||||| |||||||| || ||||| | || Sbjct 1861840 TTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTG 1861899 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || | |||||| || |||| ||||||||| Sbjct 1861900 ATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 1861940 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||||||||||||||| || || || ||||| | | ||||| Sbjct 1864360 AGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTA 1864419 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || || || | | || || || | | |||||||| Sbjct 1864420 CCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCT 1864479 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || || ||| |||||| |||||||| || ||||| | || Sbjct 1864480 TTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTG 1864539 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || | |||||| || |||| ||||||||| Sbjct 1864540 ATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 1864580 >seq7885 Length=810 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || ||||| || || || |||||||| || || ||||||| | ||| | Sbjct 530 AGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGA 589 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||||| ||| || || ||||| | ||||| ||||| | | || ||||| Sbjct 590 CCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCT 649 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| ||| ||| | || | | | || ||| || ||||| |||||| Sbjct 650 TTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCCAGAGTA 709 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| ||||| ||||| || || || | ||||| Sbjct 710 ATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||||||||| || ||||| |||||||| ||||| | | || | |||||| Sbjct 309 AGTACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGTGTACGACCATCT 368 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || || ||||| || ||||| || || | | || |||||||| ||| Sbjct 369 TCTAATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGAATACCTTCCTTATCT 428 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| | || | | || ||| || || || ||||| || ||| Sbjct 429 TGAATTTTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACCTCCAGAGTGATGGTT 488 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || ||||| | ||||| Sbjct 489 TT-CCCGTAAGAGTTTTAACGAAAATTTGCAT 519 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || || |||||||| || || ||||| | | || | |||||| Sbjct 81 AGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCT 140 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | |||||||| || | | || |||||||| ||| Sbjct 141 TCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCT 200 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| ||| | || | | || ||| || ||||| | |||||| ||| Sbjct 201 TGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTT 260 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || | ||||| Sbjct 261 TTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 >seq3153 Length=1268 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| || ||||| ||||||||||| |||||||| | | ||||| Sbjct 1186 AGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGTTCTT 1127 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || ||||| | | || || || | | |||||||| Sbjct 1126 CCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCCTTCT 1067 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| || ||| |||||| | |||||| || ||||||||||| Sbjct 1066 TTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTG 1007 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || || || || | |||||| Sbjct 1006 ATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 >seq878 Length=1131996 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||||||||| || || ||||| | || || | ||||||||||| ||| || Sbjct 558615 GTTGACTCTTTTTGAATATTATAATCAGACAATGTGCGTCCATCTTCTAGTTGTTTTCCA 558556 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | || ||||| || | | ||||||||||| |||||||||||| ||| Sbjct 558555 GCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATTTTTGCTTTT 558496 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | | ||||| ||| || || ||||| || ||||| || || | || Sbjct 558495 ACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTT 558436 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| |||||| Sbjct 558435 TTGACAAAGATCTGCAT 558419 >seq182 Length=1849075 Score = 102 bits (112), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAA 151972 ||||||| || || || || | ||||| | |||||||||| ||||| || || || Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTT--CCAGCAAA 122898 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||||| | || || || | | |||||||| || || |||||||| ||| ||| | Sbjct 122899 AATAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATT 122958 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 |||| | ||||| |||||||||||||| |||||||| ||||| | ||| ||||| Sbjct 122959 TTCTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCAC 123018 Query 152093 GAAGACCTGCAT 152104 || | |||||| Sbjct 123019 AAATATCTGCAT 123030 >seq74 Length=1704272 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 ||||| || |||||||||||| ||| ||| | || | | | ||||| || |||||| Sbjct 1126026 CCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGGTATCTGATGCTTCAACTTCA 1125967 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| || ||||| ||||| || | |||||| Sbjct 1125966 AGAGTAATAGTCTTGCCTGTTAGAGTTTTCACAAATATCTGCAT 1125923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153703331667766