Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq7885 122 7e-23 seq2112 116 3e-21 seq1955 109 5e-19 seq878 107 2e-18 seq3153 95.1 1e-14 seq74 82.4 6e-11 >seq7885 Length=810 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || ||||| ||||| ||||| ||| | | Sbjct 747 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCC 688 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| |||||| ||||||||||| |||| ||| ||| Sbjct 687 GATACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAA 628 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | || | ||| || |||||||| |||||| | ||| | ||||||||||| Sbjct 627 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTATAAT 568 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || || ||| | || | || || || ||||| Sbjct 567 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTACGACTTCGTGGTGG 521 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| ||||| | || || ||||| ||||| | ||| ||| | Sbjct 292 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 233 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| |||||| || || ||||| |||| ||||| Sbjct 232 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 173 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || || | |||| ||| || ||||| | |||||| || | ||| | | ||||||| Sbjct 172 CAGAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACACTTTCG--GATTATA 115 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| ||||||||||| |||||||||||||| ||||| || | ||||| Sbjct 114 ATATTCAAAAAGAATCAACACTACATTTAGTACTGCGTTTGAGAGGTGG 66 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| | | ||| |||||||| || |||| ||| | | Sbjct 519 ATGCAAATTTTCGTTAAAACTCTTA-CGGGAAAACCATCACTCTGGAGGTTGAAGCTTCC 461 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || |||||| || || ||||| |||| |||||| Sbjct 460 GATACTATTGAAAATGTTAAGACTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 401 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || || || || | ||| || |||||||| |||||| || | ||| | | ||||||| Sbjct 400 CAGAGACTGATCTTTGCAGGAAAACAATTAGAAGATGGTCGTACACTTT--CGGATTATA 343 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || || |||||||| || || ||| | || | ||||| || ||||| Sbjct 342 ACATCCAGAAAGAATCAACTCTTCATCTTGTACTTCGTCTTCGTGGTGG 294 >seq2112 Length=2858 Score = 116 bits (128), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 111175 GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTAT 111234 |||||| |||||| ||||||||||| |||| ||||||||||| | |||| | Sbjct 12 GTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTT 71 Query 111235 GCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCT 111294 || || ||||||||||||||| ||| | ||||||||||||| |||||||||||| Sbjct 72 GCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTCAAAAAGAATCT 131 Query 111295 ACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||| | || ||||| || || ||||| Sbjct 132 ACACTTCATCTTGTTTTGCGACTTCGTGGTGG 163 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||| ||||| || | || || ||||| ||||| | ||| ||| | Sbjct 164 AATGCAAATTTTCGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTC 223 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 |||| | ||| | |||||| ||||||| ||||| ||||| |||| || || Sbjct 224 CGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGTATTCCACCTGACCA 283 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111276 ||| || | || | ||| || |||||||| |||||| | | ||| | |||||||| Sbjct 284 ACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGACGTACACTTT--CCGATTAT 341 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||||||||| || || || | || | ||||| || ||||| Sbjct 342 AATATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGG 391 >seq1955 Length=5322578 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| | || |||||||||||||| | ||| ||| | Sbjct 1861481 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCG 1861422 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | |||||| || ||| || |||||||| |||| ||||| Sbjct 1861421 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAG 1861362 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| || ||||| | |||||| | |||| | | ||||||||| Sbjct 1861361 CAACGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCT--CAGATTATAAT 1861304 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||||||||| |||||||||||| | || || || || Sbjct 1861303 ATCCAAAAAGAATCTACACTCCATTTAGTGTTGAGACTTCGAGGAGG 1861257 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||||||||| | || || ||||| || || | ||| ||| | Sbjct 1861710 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTC 1861651 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | ||||| || ||| ||||||||||| ||||| || || Sbjct 1861650 AGACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 1861591 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | | || | ||| || |||||||| |||||| | |||| | | |||||||| Sbjct 1861590 GCAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTATAA 1861531 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||||| ||||||||||| |||||||| ||| | || || || || Sbjct 1861530 TATCCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTCGAGGAGG 1861483 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 111095 TAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAAC 111154 |||||||||| || ||||| || || || || || |||||||| ||| | ||| ||| Sbjct 1861942 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 1861883 Query 111155 CCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG 111214 | || | | | | ||||| || ||| || |||||||| |||| | Sbjct 1861882 CTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAG 1861823 Query 111215 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 111274 |||||||| | | |||| ||| ||||||||| | |||||| || ||| | | |||| Sbjct 1861822 ATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATT 1861763 Query 111275 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||||| || ||||| ||||| || ||| |||| ||| | || || || || Sbjct 1861762 ATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGG 1861711 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 111095 TAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAAC 111154 |||||||||| || ||||| || || || || || |||||||| ||| | ||| ||| Sbjct 1864582 TAAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAG 1864523 Query 111155 CCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG 111214 | || | | | | ||||| || ||| || |||||||| |||| | Sbjct 1864522 CTTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAG 1864463 Query 111215 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 111274 |||||||| | | |||| ||| ||||||||| | |||||| || ||| | | |||| Sbjct 1864462 ATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATT 1864403 Query 111275 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||||| || ||||| ||||| || ||| |||| ||| | || || || || Sbjct 1864402 ATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGGG 1864351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || ||||| ||||| | || || || || ||||| | ||| ||| | Sbjct 1860801 AATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 1860742 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | | | | |||||| || ||| || |||||||| |||| ||||| Sbjct 1860741 GGATACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 1860682 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | | |||| ||| ||||||||| | |||||| | ||| | ||||| || Sbjct 1860681 GCAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTTTAGATTACAA 1860622 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||||||||||||||||| ||||| || ||| | || || || || Sbjct 1860621 TATCCAAAAAGAATCTACACTGCATTTGGTATTGAGACTTCGGGGAGG 1860574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||||||||| | || || ||||| || || | ||| ||| | Sbjct 1861256 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTC 1861197 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || | | | | |||||| || ||| || |||||||| |||| ||||| Sbjct 1861196 AGACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCA 1861137 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| | | |||| ||| |||||||| | |||||| | |||| | | ||||| || Sbjct 1861136 GCAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAA 1861077 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| |||||||| ||||| || ||| | || ||||| || || || || Sbjct 1861076 TATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGG 1861029 >seq878 Length=1131996 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||||||||| ||||| || ||||| || || |||| || || Sbjct 558419 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 558478 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| ||||||| || || ||||| |||| ||||| Sbjct 558479 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCACCAGATCAG 558538 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | || | ||| || |||||| | |||||| || || | ||||||||| Sbjct 558539 CAAAGATTGATCTTTGCTGGAAAACAACTAGAAGATGGACGCACATTGTCTGATTATAAT 558598 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || |||||||| || ||| |||||||||| ||||| || | ||||| Sbjct 558599 ATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTGAGAGGTGG 558645 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||||||||||||| | || || ||||| ||||| | ||| ||| | Sbjct 558646 AATGCAAATTTTTGTCAAAACGCTCACTGGAAAAACGATTACTTTAGAAGTTGAAGCTTC 558705 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || ||| | || ||| |||||| || |||||||| |||| |||||| Sbjct 558706 AGATACTATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCA 558765 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT 111255 ||| || | |||| ||| || ||||||||||||||| Sbjct 558766 ACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGAT 558802 >seq3153 Length=1268 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| ||||| | || || |||||||| || | ||| ||| | Sbjct 969 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 1028 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | ||||| ||||| || |||||||| |||| |||||| Sbjct 1029 GATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 1088 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| || |||||| | |||||| | ||| | | ||||| ||| Sbjct 1089 CAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAAT 1148 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || ||||||||||||||||| |||||||| || Sbjct 1149 ATCCAAAAAGAATCTACACTCCATTTAGTATT 1180 >seq74 Length=1704272 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 111216 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111275 ||||||||| | || | ||| || ||||||||||||||| || || | | ||||| Sbjct 1126101 TCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGTAGGACACTCTCAGATTA 1126160 Query 111276 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATA 111335 |||||| || || ||||||||| ||||||| ||| | ||| | | ||||| |||| | Sbjct 1126161 TAATATTCAGAAGGAATCTACATTACATTTGGTGCTACGTTTAAGGGGTGGTGCTAAA-A 1126219 Query 111336 AACGT 111340 ||||| Sbjct 1126220 AACGT 1126224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421770351012496