Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1955 113 3e-20 seq2112 84.2 2e-11 >seq1955 Length=5322578 Score = 113 bits (124), Expect = 3e-20 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| ||||||||||| | || || || || |||||||| || || Sbjct 1861250 TTGCATTCCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATA 1861309 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||||| | | || || ||||| || || ||||||||||| || |||||||| Sbjct 1861310 ATCTGAGAGTT--CTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATC 1861367 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | ||||| || || ||||| || | || |||| ||||| | | Sbjct 1861368 TGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGC 1861427 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| || || || ||||| || || || ||||||||||| Sbjct 1861428 TTCAACTTCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||| ||| ||||| ||||| || ||| ||||| || |||||||| Sbjct 1861025 CATTCCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATC 1861084 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || ||||| || || ||||| |||||||| |||||||| Sbjct 1861085 TGAAAGAGTT--CTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCA 1861142 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | ||||| || || ||||| || | || |||| ||||| | | | Sbjct 1861143 GGTGGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCT 1861202 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || || ||||| ||||| || || || ||||||||||| Sbjct 1861203 TCAACTTCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||||||||||| |||||||| || || ||||| || ||| || || || || || Sbjct 1861704 TTGCATTCCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATA 1861763 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| | | || || || || || || ||||| |||||||| || ||||| Sbjct 1861764 ATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATC 1861823 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||| || || ||||| ||| | | |||| ||||| | | Sbjct 1861824 TGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGC 1861883 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || || ||||| || | ||||| || ||||| ||||| Sbjct 1861884 TTCAACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1861937 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||||||||||| |||||||| || || ||||| || ||| || || || || || Sbjct 1864344 TTGCATTCCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATA 1864403 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| | | || || || || || || ||||| |||||||| || ||||| Sbjct 1864404 ATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATC 1864463 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||| || || ||||| ||| | | |||| ||||| | | Sbjct 1864464 TGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGC 1864523 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || || ||||| || | ||||| || ||||| ||||| Sbjct 1864524 TTCAACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1864577 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| |||||||| || | || || || ||||||||||| || || Sbjct 1861476 TTGCATACCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATA 1861535 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| | | || || | || || || |||||||||||||| ||||| || Sbjct 1861536 ATCTGAGAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTC 1861595 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | ||||| || || ||||| ||| | || |||| ||||| | | Sbjct 1861596 AGGGGGAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGC 1861655 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || || ||||| || || || || || ||||||||||| Sbjct 1861656 TTCAACTTCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 >seq2112 Length=2858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || || ||||| || || ||||||| ||| || | || || Sbjct 373 ACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCTTCT 314 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || ||||||||||| | ||| || || | || | ||||||||| | | | Sbjct 313 AATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGT-CTTG 255 Query 44249 ATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 | || ||| || | || | || || |||| | ||| || || | ||||| || || Sbjct 254 AATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTT 195 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| ||||| |||||||| Sbjct 194 ACCCGTGAGAGTCTTGACGAAAATTTGCAT 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359955537854682